<<< ebuild_homepage_301_redirections >>> 7|200|dev-python/bcbio-gff|bcbio-gff-0.6.6.ebuild|https://pypi.python.org/pypi/bcbio-gff|https://pypi.org/project/bcbio-gff/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|429|dev-python/py2bit|py2bit-0.3.0.ebuild|https://github.com/dpryan79/py2bit|https://github.com/deeptools/py2bit|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|429|dev-python/pyBigWig|pyBigWig-0.3.17.ebuild|https://github.com/dpryan79/pyBigWig|https://github.com/deeptools/pyBigWig|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|200|dev-python/xopen|xopen-0.9.0.ebuild|https://pypi.python.org/pypi/xopen|https://pypi.org/project/xopen/|mmokrejs@fold.natur.cuni.cz:gentoo@aisha.cc:sci-biology@gentoo.org 7|200|sci-biology/aghermann|aghermann-1.1.2-r2.ebuild|http://johnhommer.com/academic/code/aghermann|http://johnhommer.com/academic/code/aghermann/|johnhommer@gmail.com:sci-biology@gentoo.org 7|200|sci-biology/angsd|angsd-0.933.ebuild|http://www.popgen.dk/angsd|http://www.popgen.dk/angsd/index.php/Main_Page|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|200|sci-biology/bambus|bambus-2.33.ebuild|https://sourceforge.net/apps/mediawiki/amos/index.php?title=AMOS|https://sourceforge.net/projects/amos/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|200|sci-biology/cast-bin|cast-bin-20080813.ebuild|http://bioinformatics.cenargen.embrapa.br/portrait/download|http://bioinformatics.cenargen.embrapa.br/portrait/download/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|200|sci-biology/cg-cat|cg-cat-20150130.ebuild|http://bibiserv.techfak.uni-bielefeld.de/cgcat|https://bibiserv.cebitec.uni-bielefeld.de/cgcat|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|200|sci-biology/cluster|cluster-1.59.ebuild|http://bonsai.hgc.jp/~mdehoon/software/cluster|http://bonsai.hgc.jp/~mdehoon/software/cluster/|je_fro@gentoo.org:sci-biology@gentoo.org 7|200|sci-biology/cnrun|cnrun-2.1.0-r2.ebuild|http://johnhommer.com/academic/code/cnrun|http://johnhommer.com/academic/code/cnrun/|johnhommer@gmail.com:sci-biology@gentoo.org 7|200|sci-biology/cramtools|cramtools-3.0.ebuild|http://www.ebi.ac.uk/ena/software/cram-toolkit|https://ena-docs.readthedocs.io/en/latest/retrieval/programmatic-access.html#cram-format|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|200|sci-biology/diamond|diamond-2.0.6.ebuild|http://ab.inf.uni-tuebingen.de/software/diamond|https://www.wsi.uni-tuebingen.de/lehrstuehle/algorithms-in-bioinformatics/software/diamond/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|200|sci-biology/erpin|erpin-5.5b.ebuild|http://rna.igmors.u-psud.fr|http://rssf.i2bc.paris-saclay.fr/|sci-biology@gentoo.org 7|200|sci-biology/freebayes|freebayes-1.3.5.ebuild|https://github.com/ekg/freebayes|https://github.com/freebayes/freebayes|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|200|sci-biology/gemini|gemini-0.30.2.ebuild|http://gemini.readthedocs.org/en/latest|https://gemini.readthedocs.io/en/latest/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|200|sci-biology/hexamer|hexamer-19990330.ebuild|http://www.sanger.ac.uk/resources/software|https://www.sanger.ac.uk/science/tools/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|200|sci-biology/IMAGE|IMAGE-2.4.1.ebuild|https://sourceforge.net/apps/mediawiki/image2|https://sourceforge.net/projects/image2/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|200|sci-biology/manatee-igs|manatee-igs-2.23.1.ebuild|http://manatee.sourceforge.net/igs|http://manatee.sourceforge.net/igs/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|200|sci-biology/msautil|msautil-1.1-r1.ebuild|http://bioresearch.byu.edu/msa|http://bioresearch.byu.edu/msa/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|200|sci-biology/OBO-Edit|OBO-Edit-2.3.1.ebuild|http://www.oboedit.org/|http://oboedit.org/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|404|sci-biology/pileup|pileup-0.6.ebuild|https://www.sanger.ac.uk/resources/software/ssaha2/|https://www.sanger.ac.uk/science/search-tools-and-software|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|200|sci-biology/portrait|portrait-1.1.ebuild|http://bioinformatics.cenargen.embrapa.br/portrait|http://bioinformatics.cenargen.embrapa.br/portrait/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|200|sci-biology/prot4EST|prot4EST-3.1b.ebuild|http://www.biomedcentral.com/1471-2105/5/187|https://bmcbioinformatics.biomedcentral.com/articles/10.1186/1471-2105-5-187|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|200|sci-biology/pyfaidx|pyfaidx-0.5.9.2.ebuild|https://pypi.python.org/pypi/pyfaidx|https://pypi.org/project/pyfaidx/|mschu.dev@gmail.com:sci-biology@gentoo.org 7|200|sci-biology/pysamstats|pysamstats-1.1.2.ebuild|https://pypi.python.org/pypi/pysamstats|https://pypi.org/project/pysamstats/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|200|sci-biology/screed|screed-1.0.4.ebuild|https://github.com/ged-lab/screed/|https://github.com/dib-lab/screed|sci-biology@gentoo.org 7|200|sci-biology/screed|screed-1.0.4.ebuild|https://pypi.python.org/pypi/screed|https://pypi.org/project/screed/|sci-biology@gentoo.org 7|200|sci-biology/seqtools|seqtools-4.44.1.ebuild|http://www.sanger.ac.uk/resources/software/seqtools|https://www.sanger.ac.uk/tool/seqtools/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|200|sci-biology/tagdust|tagdust-20101028.ebuild|http://genome.gsc.riken.jp/osc/english/dataresource|http://genome.gsc.riken.jp/osc/english/dataresource/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|200|sci-libs/itk|itk-5.0.1.ebuild|http://www.itk.org|https://itk.org/|maintainer-wanted@gentoo.org:sci-biology@gentoo.org <<< ebuild_homepage_http_statuscode >>> 7|403|sci-biology/AlignGraph|AlignGraph-9999|http://bioinformatics.oxfordjournals.org/content/30/12/i319.long|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|403|sci-biology/caftools|caftools-2.0.2|https://www.ncbi.nlm.nih.gov/pmc/articles/PMC310697/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org|259842:755518 7|000|sci-biology/CAT|CAT-1.3|http://cbb.big.ac.cn/Software|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|000|sci-biology/CAT|CAT-1.3|https://bigd.big.ac.cn/tools/cat|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|000|sci-biology/KaKs_Calculator|KaKs_Calculator-1.2|https://bigd.big.ac.cn/tools/kaks|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|403|sci-biology/KaKs_Calculator|KaKs_Calculator-2.0|https://www.sciencedirect.com/science/article/pii/S1672022910600083|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|403|sci-biology/karect|karect-1.0|http://bioinformatics.oxfordjournals.org/content/31/21/3421.abstract|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|403|sci-biology/MaSuRCA|MaSuRCA-4.0.1|http://bioinformatics.oxfordjournals.org/content/29/21/2669|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|403|sci-biology/megahit|megahit-1.2.9|http://bioinformatics.oxfordjournals.org/content/31/10/1674.abstract|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|404|sci-biology/MochiView|MochiView-1.46|https://www.johnsonlab.ucsf.edu/mochi.html|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|000|sci-biology/mreps|mreps-2.6.01|https://mreps.univ-mlv.fr/|sci-biology@gentoo.org|257676:755455 7|404|sci-biology/ncbi-blast+|ncbi-blast+-2.2.31|https://ncbi.github.io/cxx-toolkit/t|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org|715882:755767 7|000|sci-biology/pairagon|pairagon-1.1|https://mblab.wustl.edu/software.html|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org|755530 7|000|sci-biology/ParaAT|ParaAT-1.0|http://cbb.big.ac.cn/software|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|403|sci-biology/ParaAT|ParaAT-1.0|https://www.sciencedirect.com/science/article/pii/S0006291X12003518|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|000|sci-biology/primerD|primerD-1.0.0|https://mblab.wustl.edu/software.html|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|000|sci-biology/twinscan|twinscan-4.1.2-r1|https://mblab.wustl.edu/software.html|sci-biology@gentoo.org|154939:755461 7|303|sci-biology/wgs_tools|wgs_tools-9999|https://www.ncbi.nlm.nih.gov/genbank/wgs|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org|755794 7|403|sci-libs/jhdf5|jhdf5-19.04.0|https://wiki-bsse.ethz.ch/display/JHDF5|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org <<< ebuild_homepage_redirection_http_to_https >>> 7|sci-biology/BRAKER|BRAKER-2.1.2.ebuild|http://bioinf.uni-greifswald.de/augustus/downloads|https://bioinf.uni-greifswald.de/augustus/downloads/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/BRAKER|BRAKER-2.1.2.ebuild|http://bioinf.uni-greifswald.de/bioinf/braker|https://bioinf.uni-greifswald.de/bioinf/braker/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/coral|coral-1.4.1.ebuild|http://www.cs.helsinki.fi/u/lmsalmel/coral|https://www.cs.helsinki.fi/u/lmsalmel/coral/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/jellyfish|jellyfish-1.1.12.ebuild|http://www.cbcb.umd.edu/software/jellyfish|https://www.cbcb.umd.edu/software/jellyfish/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/mip-scaffolder|mip-scaffolder-0.6.ebuild|http://www.cs.helsinki.fi/u/lmsalmel/mip-scaffolder|https://www.cs.helsinki.fi/u/lmsalmel/mip-scaffolder/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/oases|oases-0.2.08.ebuild|http://www.ebi.ac.uk/~zerbino/oases|https://www.ebi.ac.uk/~zerbino/oases/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/perga|perga-9999.ebuild|http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4252104|https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4252104/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/sff_dump|sff_dump-1.04.ebuild|http://genome.imb-jena.de/software/roche454ace2caf|https://genome.imb-jena.de/software/roche454ace2caf/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/trf-bin|trf-bin-4.09.ebuild|http://tandem.bu.edu/trf/trf.html|https://tandem.bu.edu/trf/trf.html|sci-biology@gentoo.org <<< ebuild_homepage_redirection_missing_slash_www >>> 7|sci-biology/hisat2|hisat2-2.2.1.ebuild|https://ccb.jhu.edu/software/hisat2|https://ccb.jhu.edu/software/hisat2/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/jigsaw|jigsaw-3.2.10m.ebuild|https://www.cbcb.umd.edu/software/jigsaw|https://www.cbcb.umd.edu/software/jigsaw/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/KING|KING-2.2.5.ebuild|https://people.virginia.edu/~wc9c/KING|https://people.virginia.edu/~wc9c/KING/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/kraken|kraken-1.1.1-r2.ebuild|https://ccb.jhu.edu/software/kraken|https://ccb.jhu.edu/software/kraken/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/nextclip|nextclip-1.3.1.ebuild|https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3928519|https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3928519/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/pybedtools|pybedtools-0.8.0.ebuild|https://daler.github.io/pybedtools|https://daler.github.io/pybedtools/|mschu.dev@gmail.com:sci-biology@gentoo.org 7|sci-biology/SPAdes|SPAdes-3.15.1.ebuild|https://cab.spbu.ru/software/spades|https://cab.spbu.ru/software/spades/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/stringtie|stringtie-2.1.5.ebuild|https://ccb.jhu.edu/software/stringtie|https://ccb.jhu.edu/software/stringtie/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org <<< ebuild_homepage_unsync >>> 2|sci-biology/biobambam2|sci-biology@gentoo.org 2|sci-biology/bowtie|sci-biology@gentoo.org 2|sci-biology/jellyfish|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 2|sci-biology/KaKs_Calculator|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 2|sci-biology/kraken|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 2|sci-biology/ncbi-blast+|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 2|sci-biology/staden|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org <<< ebuild_leading_trailing_whitespaces_in_variables >>> sci-biology/tabixpp|tabixpp-1.1.0.ebuild|DESCRIPTION|sci-biology@gentoo.org <<< ebuild_missing_eclasses >>> 7|sci-biology/flexbar|flexbar-3.5.0.ebuild|flag-o-matic(append-cppflags,append-cxxflags)|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/ncbi-blast+|ncbi-blast+-2.2.30.ebuild|epatch(epatch)|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org <<< ebuild_missing_eclasses_fatal >>> 7|sci-biology/ncbi-blast+|ncbi-blast+-2.2.30.ebuild|epatch(epatch)|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org <<< ebuild_missing_zip_dependency >>> 7|sci-biology/graf-bin|graf-bin-2.4|https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/GetZip.cgi?zip_name=GRAF_files.zip|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org <<< ebuild_multiple_deps_per_line >>> 7|sci-biology/arachne|arachne-46233.ebuild|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/deeptools|deeptools-3.5.0.ebuild|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/maker|maker-3.01.02_beta.ebuild|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/megahit|megahit-1.2.9.ebuild|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/ncbi-blast+|ncbi-blast+-2.11.0.ebuild|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/ncbi-blast+|ncbi-blast+-2.2.30.ebuild|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/ncbi-blast+|ncbi-blast+-2.2.31.ebuild|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/ncbi-blast+|ncbi-blast+-2.6.0.ebuild|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/ncbi-blast+|ncbi-blast+-2.8.1.ebuild|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/ncbi-tools++|ncbi-tools++-12.0.0.ebuild|sci-biology@gentoo.org 7|sci-biology/ncbi-tools++|ncbi-tools++-18.0.0.ebuild|sci-biology@gentoo.org 7|sci-biology/ncbi-tools++|ncbi-tools++-22.0.0.ebuild|sci-biology@gentoo.org 7|sci-biology/prokka|prokka-1.14.6.ebuild|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org <<< ebuild_src_uri_check >>> 7|sci-biology/abacas|abacas-1.3.1|https://downloads.sourceforge.net/project/abacas/abacas.1.3.1.pl|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/bambus|bambus-2.33|https://sourceforge.net/projects/amos/files/bambus/2.33/bambus-2.33.tar.gz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/BBmap|BBmap-38.87|https://sourceforge.net/projects/bbmap/files/BBMap_38.87.tar.gz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/clview|clview-0.1|https://sourceforge.net/projects/clview/files/source%20code/clview_src.tar.gz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/conrad|conrad-1|https://downloads.sourceforge.net/project/conradcrf/conradcrf/Version%201/conradSrc.zip|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/cortex_var|cortex_var-1.0.5.21|https://sourceforge.net/projects/cortexassembler/files/cortex_var/latest/CORTEX_release_v1.0.5.21.tgz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/cross_genome|cross_genome-20140822|https://sourceforge.net/projects/phusion2/files/cross_genome/cross_genome.tar.gz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org|755296 7|sci-biology/estscan|estscan-3.0.3|https://downloads.sourceforge.net/estscan/At.smat.gz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org|254027 7|sci-biology/estscan|estscan-3.0.3|https://downloads.sourceforge.net/estscan/Dm.smat.gz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org|254027 7|sci-biology/estscan|estscan-3.0.3|https://downloads.sourceforge.net/estscan/Dr.smat.gz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org|254027 7|sci-biology/estscan|estscan-3.0.3|https://downloads.sourceforge.net/estscan/estscan-3.0.3.tar.gz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org|254027 7|sci-biology/estscan|estscan-3.0.3|https://downloads.sourceforge.net/estscan/Hs.smat.gz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org|254027 7|sci-biology/estscan|estscan-3.0.3|https://downloads.sourceforge.net/estscan/Mm.smat.gz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org|254027 7|sci-biology/estscan|estscan-3.0.3|https://downloads.sourceforge.net/estscan/Rn.smat.gz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org|254027 7|sci-biology/estscan|estscan-3.0.3|https://downloads.sourceforge.net/estscan/user_guide_fev_07.pdf|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org|254027 7|sci-biology/FLASH|FLASH-1.2.11|https://downloads.sourceforge.net/project/flashpage/FLASH-1.2.11.tar.gz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org|755563 7|sci-biology/fsa|fsa-1.15.9|https://downloads.sourceforge.net/project/fsa/fsa-1.15.9.tar.gz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/genomeview-bin|genomeview-bin-2450|https://downloads.sourceforge.net/project/genomeview/GenomeView/genomeview-2450.zip|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/glean|glean-1.0.1|https://downloads.sourceforge.net/project/glean-gene/GLEAN/glean-1-0-1/glean-1-0-1.tar.gz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/IMAGE|IMAGE-2.4.1|https://sourceforge.net/projects/image2/files/IMAGE_version2.4.1_64bit.zip|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/jtreeview-bin|jtreeview-bin-1.2.0|https://sourceforge.net/projects/jtreeview/files/helper-scripts/0.0.2/helper-scripts-0.0.2.tar.gz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/jtreeview-bin|jtreeview-bin-1.2.0|https://sourceforge.net/projects/jtreeview/files/jtreeview/1.2.0/TreeView-1.2.0-bin.tar.gz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/jtreeview|jtreeview-1.2.0|https://sourceforge.net/projects/jtreeview/files/helper-scripts/0.0.2/helper-scripts-0.0.2.tar.gz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/jtreeview|jtreeview-1.2.0|https://sourceforge.net/projects/jtreeview/files/jtreeview/1.2.0/TreeView-1.2.0-src.tar.gz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/lucy|lucy-1.20|https://sourceforge.net/projects/lucy/files/lucy/lucy%201.20/lucy1.20.tar.gz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/manatee-igs|manatee-igs-2.23.1|https://downloads.sourceforge.net/project/manatee/igs_manatee/2.23.1/manatee-2.23.1_linux.tgz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/MeV|MeV-4.8.1|https://downloads.sourceforge.net/project/mev-tm4/mev-tm4/MeV%204.8.1/MeV_4_8_1_r2727_linux.tar.gz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/MolBioLib|MolBioLib-5|https://sourceforge.net/projects/molbiolib/files/MolBioLib_public.version5.tar.gz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/NGSEPcore-bin|NGSEPcore-bin-4.0.3|https://sourceforge.net/projects/ngsep/files/Library/NGSEPcore_4.0.3.jar|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/NGSEPcore-bin|NGSEPcore-bin-4.0.3|https://sourceforge.net/projects/ngsep/files/training/ManualNGSEP_v4.0.3.pdf|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/NGSEPcore-bin|NGSEPcore-bin-4.0.3|https://sourceforge.net/projects/ngsep/files/training/QuickStart.txt|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/NGSEPcore-bin|NGSEPcore-bin-4.0.3|https://sourceforge.net/projects/ngsep/files/training/Tutorial.txt|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/NGSEPcore|NGSEPcore-4.0.3|https://sourceforge.net/projects/ngsep/files/SourceCode/NGSEPcore_4.0.3.tar.gz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/NGSEPcore|NGSEPcore-4.0.3|https://sourceforge.net/projects/ngsep/files/training/ManualNGSEP_v4.0.3.pdf|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/NGSEPcore|NGSEPcore-4.0.3|https://sourceforge.net/projects/ngsep/files/training/QuickStart.txt|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/NGSEPcore|NGSEPcore-4.0.3|https://sourceforge.net/projects/ngsep/files/training/Tutorial.txt|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/OBO-Edit|OBO-Edit-2.3.1|https://downloads.sourceforge.net/project/geneontology/OBO-Edit%202%20%5BLatest%20versions%5D/OBO-Edit%202.3.1/oboedit_2_3_1_unix_install4j.sh|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org|755149 7|sci-biology/phusion2|phusion2-3.0|https://downloads.sourceforge.net/project/phusion2/phusion2-3.0.tar.gz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/prinseq-lite|prinseq-lite-0.20.4|https://sourceforge.net/projects/prinseq/files/standalone/prinseq-lite-0.20.4.tar.gz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/RSeQC|RSeQC-4.0.0-r1|https://sourceforge.net/projects/rseqc/files/other/fetchChromSizes|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/RSeQC|RSeQC-4.0.0-r1|https://sourceforge.net/projects/rseqc/files/RSeQC-4.0.0.tar.gz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/samstat|samstat-1.5.1|https://sourceforge.net/projects/samstat/files/samstat-1.5.1.tar.gz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/skewer-bin|skewer-bin-0.2.2|https://sourceforge.net/projects/skewer/files/Binaries/skewer-0.2.2-linux-x86_64|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org|755572 7|sci-biology/skewer-bin|skewer-bin-0.2.2|https://sourceforge.net/projects/skewer/files/Scripts/srna-scripts-0.1.2.tar.gz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org|755572 7|sci-biology/smalt-bin|smalt-bin-0.7.6|https://sourceforge.net/projects/smalt/files/smalt-0.7.6-bin.tar.gz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/SnpEff|SnpEff-4.3t|https://downloads.sourceforge.net/project/snpeff/snpEff_v4_3t_core.zip|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org|755782 7|sci-biology/SolexaQA|SolexaQA-3.1.7.1|https://sourceforge.net/projects/solexaqa/files/src/SolexaQA++_v3.1.7.1.zip|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/subread|subread-2.0.1|https://sourceforge.net/projects/subread/files/subread-2.0.1/subread-2.0.1-source.tar.gz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org <<< ebuild_unused_eclasses >>> 7|sci-biology/bamql|bamql-1.6.1.ebuild|eutils|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/bedops|bedops-2.4.26.ebuild|toolchain-funcs|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/bedops|bedops-2.4.39.ebuild|toolchain-funcs|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/bismark|bismark-0.23.0.ebuild|toolchain-funcs|yanlinlin82@gmail.com:sci-biology@gentoo.org 7|sci-biology/cgview-bin|cgview-bin-1.0.0.ebuild|eutils:toolchain-funcs|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/fastqc|fastqc-0.11.3.ebuild|eutils|mmokrejs@fold.natur.cuni.cz:anton.stay.connected@gmail.com:sci-biology@gentoo.org 7|sci-biology/fsl|fsl-6.0.2.ebuild|flag-o-matic|sci-biology@gentoo.org 7|sci-biology/fsl|fsl-6.0.2-r1.ebuild|flag-o-matic|sci-biology@gentoo.org 7|sci-biology/gffread|gffread-0.11.0.ebuild|toolchain-funcs|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/glean|glean-1.0.1.ebuild|toolchain-funcs|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/jellyfish|jellyfish-1.1.12.ebuild|flag-o-matic|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/jellyfish|jellyfish-2.3.0.ebuild|flag-o-matic|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/KaKs_Calculator|KaKs_Calculator-1.2.ebuild|eutils|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/KaKs_Calculator|KaKs_Calculator-2.0.ebuild|eutils|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/kat|kat-2.4.2.ebuild|flag-o-matic|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/kat|kat-9999.ebuild|flag-o-matic|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/merlin|merlin-1.1.2.ebuild|flag-o-matic|sci-biology@gentoo.org 7|sci-biology/ncbi-blast+|ncbi-blast+-2.11.0.ebuild|eutils:flag-o-matic|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/ncbi-blast+|ncbi-blast+-2.2.30.ebuild|eutils:flag-o-matic|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/ncbi-blast+|ncbi-blast+-2.2.31.ebuild|eutils:flag-o-matic|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/ncbi-blast+|ncbi-blast+-2.6.0.ebuild|eutils:flag-o-matic|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/ncbi-blast+|ncbi-blast+-2.8.1.ebuild|eutils:flag-o-matic|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/ncbi-tools++|ncbi-tools++-12.0.0.ebuild|flag-o-matic|sci-biology@gentoo.org 7|sci-biology/ncbi-tools++|ncbi-tools++-18.0.0.ebuild|eutils:flag-o-matic|sci-biology@gentoo.org 7|sci-biology/ncbi-tools++|ncbi-tools++-22.0.0.ebuild|eutils:flag-o-matic|sci-biology@gentoo.org 7|sci-biology/nextclip|nextclip-1.3.1.ebuild|flag-o-matic|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/OBO-Edit|OBO-Edit-2.3.1.ebuild|toolchain-funcs|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/pairagon|pairagon-1.1.ebuild|toolchain-funcs|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/sickle|sickle-1.33.ebuild|toolchain-funcs|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/sickle|sickle-9999.ebuild|toolchain-funcs|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/SOAPdenovo2|SOAPdenovo2-242.ebuild|toolchain-funcs|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/stacks|stacks-2.55.ebuild|flag-o-matic|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/tabixpp|tabixpp-1.1.0.ebuild|toolchain-funcs|sci-biology@gentoo.org 7|sci-biology/TransDecoder|TransDecoder-5.5.0.ebuild|toolchain-funcs|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/trinityrnaseq|trinityrnaseq-2.11.0.ebuild|toolchain-funcs|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/Trinotate|Trinotate-3.2.1.ebuild|toolchain-funcs|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/verifyBamID|verifyBamID-1.1.3.ebuild|toolchain-funcs|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-libs/itk|itk-5.0.1.ebuild|toolchain-funcs|maintainer-wanted@gentoo.org:sci-biology@gentoo.org 7|sci-libs/itk|itk-5.1.0.ebuild|toolchain-funcs|maintainer-wanted@gentoo.org:sci-biology@gentoo.org 7|sci-libs/lib2bit|lib2bit-0.2.1.ebuild|eutils|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org <<< ebuild_unused_patches >>> sci-biology/bowtie|bowtie-1.2.2-_ContextLss-1.1-1.4.patch|sci-biology@gentoo.org sci-biology/bowtie|bowtie-1.2.2-fix-Intel-compilation.patch|sci-biology@gentoo.org sci-biology/bowtie|bowtie-1.2.2-unbundle-seqan.patch|sci-biology@gentoo.org sci-biology/bowtie|bowtie-1.2.2-void2int.patch|sci-biology@gentoo.org sci-biology/caftools|Makefile.in.patch|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/cluster|cluster-1.38-helpmenu-fix.patch|je_fro@gentoo.org:sci-biology@gentoo.org sci-biology/GAL|Build.PL.patch|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/gffcompare|Makefile.patch|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/quorum|quorum-0.2.1-use-jellyfish1.patch|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/SOAPdenovo2|soapdenovo2.1|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/sra_sdk|libs_sra_Makefile.patch|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/sra_sdk|sra_sdk-destdir.patch|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/sra_sdk|tools_vdb-vcopy_Makefile.patch|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/staden|staden-2.0.0_beta10-ldflags.patch|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/staden|staden-2.0.0_beta10-zlib.patch|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-libs/itk|0001-BUG-Wrap-TransformFileReader-TransformFileWriter.patch|maintainer-wanted@gentoo.org:sci-biology@gentoo.org sci-libs/itk|0002-COMP-Fixed-itkQuasiNewtonOptimizerv4-wrapping-warnin.patch|maintainer-wanted@gentoo.org:sci-biology@gentoo.org sci-libs/itk|0003-COMP-Fixed-itkGradientDescentOptimizerv4-wrapping-wa.patch|maintainer-wanted@gentoo.org:sci-biology@gentoo.org sci-libs/itk|0004-COMP-Warp-OptimizerParameterScalesEstimatorTemplate.patch|maintainer-wanted@gentoo.org:sci-biology@gentoo.org sci-libs/itk|0005-make-gdcm-helper-library-static.patch|maintainer-wanted@gentoo.org:sci-biology@gentoo.org sci-libs/itk|nrrdio-linking.patch|maintainer-wanted@gentoo.org:sci-biology@gentoo.org sci-libs/lib2bit|lib2bit-0.2.1_respect_DESTDIR.patch|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org <<< ebuild_unused_patches_simple >>> sci-biology/cluster|je_fro@gentoo.org:sci-biology@gentoo.org sci-biology/GAL|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/gffcompare|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/quorum|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/sra_sdk|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org <<< packages_full_repoman >>> sci-libs/iRODS|KEYWORDS.missing|sci-biology@gentoo.org sci-libs/htslib-plugins|KEYWORDS.missing|sci-biology@gentoo.org sci-biology/wcd|KEYWORDS.missing|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/subread|KEYWORDS.missing|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/stacks|KEYWORDS.missing|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/staden_doc|upstream.workaround|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/sra_sdk|KEYWORDS.missing|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/sambamba|KEYWORDS.missing|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/sailfish|KEYWORDS.missing|sci-biology@gentoo.org:mschu.dev@gmail.com sci-biology/pufferfish|KEYWORDS.missing|sci-biology@gentoo.org sci-biology/primerD|KEYWORDS.missing|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/polyphen|upstream.workaround|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/oases|KEYWORDS.missing|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/mrsfast|KEYWORDS.missing|sci-biology@gentoo.org sci-biology/mgblast|KEYWORDS.missing|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/manatee-jcvi|KEYWORDS.missing|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/jigsaw|KEYWORDS.missing|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/arachne|KEYWORDS.missing|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/aghermann|KEYWORDS.missing|johnhommer@gmail.com:sci-biology@gentoo.org sci-biology/SOAPdenovo2|KEYWORDS.missing|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/OBO-Edit|KEYWORDS.missing|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/MolBioLib|KEYWORDS.missing|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/GAL|KEYWORDS.missing|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org dev-java/htsjdk|KEYWORDS.missing|ercpe@gentoo.org:sci-biology@gentoo.org sci-biology/trinityrnaseq|KEYWORDS.missing|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org dev-perl/Bio-EnsEMBL|KEYWORDS.missing|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/cortex_var|KEYWORDS.missing|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/maker|KEYWORDS.missing|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/SPAdes|KEYWORDS.missing|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/Trinotate|KEYWORDS.missing|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/vcflib|KEYWORDS.missing|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/NGSEPcore|upstream.workaround|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/salmon|KEYWORDS.missing|sci-biology@gentoo.org:mschu.dev@gmail.com