<<< ebuild_homepage_bad_statuscode >>> 7|404|2021-09-01|sci-biology/ncbi-blast+|ncbi-blast+-2.2.31.ebuild|https://ncbi.github.io/cxx-toolkit/t|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|000|2021-09-01|sci-biology/primerD|primerD-1.0.0.ebuild|https://mblab.wustl.edu/software.html|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org <<< ebuild_homepage_redirections >>> 7|200|2021-06-07|sci-biology/jellyfish|jellyfish-1.1.12.ebuild|http://www.cbcb.umd.edu/software/jellyfish|http://www.cbcb.umd.edu/software/jellyfish/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 8|200|2021-08-03|sci-biology/MuSeqBox|MuSeqBox-5.7.2021.ebuild|http://brendelgroup.org/bioinformatics2go/MuSeqBox.php|https://brendelgroup.org/bioinformatics2go/MuSeqBox.php|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org <<< ebuild_homepage_unsync >>> 2|sci-biology/biobambam2|sci-biology@gentoo.org 2|sci-biology/bowtie|sci-biology@gentoo.org 2|sci-biology/jellyfish|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 2|sci-biology/KaKs_Calculator|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 2|sci-biology/kraken|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 2|sci-biology/ncbi-blast+|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 2|sci-biology/staden|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org <<< ebuild_leading_trailing_whitespaces_in_variables >>> 7|sci-biology/tabixpp|tabixpp-1.1.0.ebuild|DESCRIPTION|sci-biology@gentoo.org <<< ebuild_missing_eclasses >>> 7|sci-biology/flexbar|flexbar-3.5.0.ebuild|flag-o-matic(append-cppflags,append-cxxflags)|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/ncbi-blast+|ncbi-blast+-2.2.30.ebuild|epatch(epatch)|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org <<< ebuild_missing_eclasses_fatal >>> 7|sci-biology/ncbi-blast+|ncbi-blast+-2.2.30.ebuild|epatch(epatch)|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org <<< ebuild_multiple_deps_per_line >>> 7|sci-biology/arachne|arachne-46233.ebuild|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/deeptools|deeptools-3.5.0.ebuild|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/megahit|megahit-1.2.9.ebuild|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/ncbi-blast+|ncbi-blast+-2.11.0.ebuild|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/ncbi-blast+|ncbi-blast+-2.2.30.ebuild|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/ncbi-blast+|ncbi-blast+-2.2.31.ebuild|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/ncbi-blast+|ncbi-blast+-2.6.0.ebuild|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/ncbi-blast+|ncbi-blast+-2.8.1.ebuild|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/ncbi-tools++|ncbi-tools++-12.0.0.ebuild|sci-biology@gentoo.org 7|sci-biology/ncbi-tools++|ncbi-tools++-18.0.0.ebuild|sci-biology@gentoo.org 7|sci-biology/ncbi-tools++|ncbi-tools++-22.0.0.ebuild|sci-biology@gentoo.org 7|sci-biology/prokka|prokka-1.14.6.ebuild|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org <<< ebuild_unused_eclasses >>> 7|sci-biology/bamql|bamql-1.6.1.ebuild|eutils|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/bedops|bedops-2.4.26.ebuild|toolchain-funcs|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/bedops|bedops-2.4.39.ebuild|toolchain-funcs|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/bismark|bismark-0.23.0.ebuild|toolchain-funcs|yanlinlin82@gmail.com:sci-biology@gentoo.org 7|sci-biology/fastqc|fastqc-0.11.3.ebuild|eutils|mmokrejs@fold.natur.cuni.cz:anton.stay.connected@gmail.com:sci-biology@gentoo.org 7|sci-biology/fsl|fsl-6.0.2.ebuild|flag-o-matic|sci-biology@gentoo.org 7|sci-biology/fsl|fsl-6.0.2-r1.ebuild|flag-o-matic|sci-biology@gentoo.org 7|sci-biology/fsl|fsl-6.0.4.ebuild|flag-o-matic|sci-biology@gentoo.org 7|sci-biology/gffread|gffread-0.11.0.ebuild|toolchain-funcs|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/glean|glean-1.0.1.ebuild|toolchain-funcs|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/jellyfish|jellyfish-1.1.12.ebuild|flag-o-matic|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/jellyfish|jellyfish-2.3.0.ebuild|flag-o-matic|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/KaKs_Calculator|KaKs_Calculator-1.2.ebuild|eutils|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/KaKs_Calculator|KaKs_Calculator-2.0.ebuild|eutils|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/kat|kat-2.4.2.ebuild|flag-o-matic|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/kat|kat-9999.ebuild|flag-o-matic|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/merlin|merlin-1.1.2.ebuild|flag-o-matic|sci-biology@gentoo.org 7|sci-biology/ncbi-blast+|ncbi-blast+-2.11.0.ebuild|eutils:flag-o-matic|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/ncbi-blast+|ncbi-blast+-2.2.30.ebuild|eutils:flag-o-matic|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/ncbi-blast+|ncbi-blast+-2.2.31.ebuild|eutils:flag-o-matic|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/ncbi-blast+|ncbi-blast+-2.6.0.ebuild|eutils:flag-o-matic|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/ncbi-blast+|ncbi-blast+-2.8.1.ebuild|eutils:flag-o-matic|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/ncbi-tools++|ncbi-tools++-12.0.0.ebuild|flag-o-matic|sci-biology@gentoo.org 7|sci-biology/ncbi-tools++|ncbi-tools++-18.0.0.ebuild|eutils:flag-o-matic|sci-biology@gentoo.org 7|sci-biology/ncbi-tools++|ncbi-tools++-22.0.0.ebuild|eutils:flag-o-matic|sci-biology@gentoo.org 7|sci-biology/nextclip|nextclip-1.3.1.ebuild|flag-o-matic|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/OBO-Edit|OBO-Edit-2.3.1.ebuild|toolchain-funcs|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/pairagon|pairagon-1.1.ebuild|toolchain-funcs|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/sickle|sickle-1.33.ebuild|toolchain-funcs|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/sickle|sickle-9999.ebuild|toolchain-funcs|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/SOAPdenovo2|SOAPdenovo2-242.ebuild|toolchain-funcs|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/stacks|stacks-2.55.ebuild|flag-o-matic|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/tabixpp|tabixpp-1.1.0.ebuild|toolchain-funcs|sci-biology@gentoo.org 7|sci-biology/TransDecoder|TransDecoder-5.5.0.ebuild|toolchain-funcs|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/trinityrnaseq|trinityrnaseq-2.11.0.ebuild|toolchain-funcs|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/Trinotate|Trinotate-3.2.1.ebuild|toolchain-funcs|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/verifyBamID|verifyBamID-1.1.3.ebuild|toolchain-funcs|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-libs/itk|itk-5.0.1.ebuild|toolchain-funcs|maintainer-wanted@gentoo.org:sci-biology@gentoo.org 7|sci-libs/itk|itk-5.1.0.ebuild|toolchain-funcs|maintainer-wanted@gentoo.org:sci-biology@gentoo.org 7|sci-libs/lib2bit|lib2bit-0.2.1.ebuild|eutils|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org <<< ebuild_unused_patches >>> sci-biology/bowtie|bowtie-1.2.2-_ContextLss-1.1-1.4.patch|sci-biology@gentoo.org sci-biology/bowtie|bowtie-1.2.2-fix-Intel-compilation.patch|sci-biology@gentoo.org sci-biology/bowtie|bowtie-1.2.2-unbundle-seqan.patch|sci-biology@gentoo.org sci-biology/bowtie|bowtie-1.2.2-void2int.patch|sci-biology@gentoo.org sci-biology/caftools|Makefile.in.patch|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/cluster|cluster-1.38-helpmenu-fix.patch|je_fro@gentoo.org:sci-biology@gentoo.org sci-biology/GAL|Build.PL.patch|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/gffcompare|Makefile.patch|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/quorum|quorum-0.2.1-use-jellyfish1.patch|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/SOAPdenovo2|soapdenovo2.1|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/sra_sdk|libs_sra_Makefile.patch|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/sra_sdk|sra_sdk-destdir.patch|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/sra_sdk|tools_vdb-vcopy_Makefile.patch|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/staden|staden-2.0.0_beta10-ldflags.patch|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/staden|staden-2.0.0_beta10-zlib.patch|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-libs/itk|0001-BUG-Wrap-TransformFileReader-TransformFileWriter.patch|maintainer-wanted@gentoo.org:sci-biology@gentoo.org sci-libs/itk|0002-COMP-Fixed-itkQuasiNewtonOptimizerv4-wrapping-warnin.patch|maintainer-wanted@gentoo.org:sci-biology@gentoo.org sci-libs/itk|0003-COMP-Fixed-itkGradientDescentOptimizerv4-wrapping-wa.patch|maintainer-wanted@gentoo.org:sci-biology@gentoo.org sci-libs/itk|0004-COMP-Warp-OptimizerParameterScalesEstimatorTemplate.patch|maintainer-wanted@gentoo.org:sci-biology@gentoo.org sci-libs/itk|0005-make-gdcm-helper-library-static.patch|maintainer-wanted@gentoo.org:sci-biology@gentoo.org sci-libs/itk|nrrdio-linking.patch|maintainer-wanted@gentoo.org:sci-biology@gentoo.org sci-libs/lib2bit|lib2bit-0.2.1_respect_DESTDIR.patch|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org <<< ebuild_unused_patches_simple >>> sci-biology/cluster|je_fro@gentoo.org:sci-biology@gentoo.org sci-biology/GAL|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/gffcompare|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/quorum|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/sra_sdk|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org <<< packages_full_repoman >>> sci-libs/iRODS|KEYWORDS.missing|sci-biology@gentoo.org sci-libs/htslib-plugins|KEYWORDS.missing|sci-biology@gentoo.org sci-biology/wcd|KEYWORDS.missing|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/subread|KEYWORDS.missing|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/stacks|KEYWORDS.missing|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/staden_doc|upstream.workaround|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/sra_sdk|KEYWORDS.missing|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/sambamba|KEYWORDS.missing|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/sailfish|KEYWORDS.missing|sci-biology@gentoo.org:mschu.dev@gmail.com sci-biology/pufferfish|KEYWORDS.missing|sci-biology@gentoo.org sci-biology/polyphen|upstream.workaround|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/oases|KEYWORDS.missing|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/mrsfast|KEYWORDS.missing|sci-biology@gentoo.org sci-biology/manatee-jcvi|KEYWORDS.missing|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/jigsaw|KEYWORDS.missing|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/arachne|KEYWORDS.missing|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/aghermann|KEYWORDS.missing|johnhommer@gmail.com:sci-biology@gentoo.org sci-biology/SOAPdenovo2|KEYWORDS.missing|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/OBO-Edit|KEYWORDS.missing|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/MolBioLib|KEYWORDS.missing|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/GAL|KEYWORDS.missing|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org dev-java/htsjdk|KEYWORDS.missing|ercpe@gentoo.org:sci-biology@gentoo.org sci-biology/trinityrnaseq|KEYWORDS.missing|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org dev-perl/Bio-EnsEMBL|KEYWORDS.missing|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/cortex_var|KEYWORDS.missing|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/SPAdes|KEYWORDS.missing|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/Trinotate|KEYWORDS.missing|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/vcflib|KEYWORDS.missing|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/NGSEPcore|upstream.workaround|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/primerD|KEYWORDS.missing|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/salmon|KEYWORDS.missing|sci-biology@gentoo.org:mschu.dev@gmail.com