<<< BAS-IMP-ebuild_multiple_deps_per_line >>> sci-biology/cegma|cegma-2.5.ebuild|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/gatk|gatk-3.8.1.ebuild|sci-biology@gentoo.org sci-biology/gatk|gatk-9999.ebuild|sci-biology@gentoo.org sci-biology/genometools|genometools-1.5.10.ebuild|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/maker|maker-2.31.10.ebuild|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/maker|maker-3.01.02_beta.ebuild|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/megahit|megahit-9999.ebuild|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/ncbi-blast+|ncbi-blast+-2.2.30.ebuild|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/ncbi-blast+|ncbi-blast+-2.2.31.ebuild|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/ncbi-blast+|ncbi-blast+-2.6.0.ebuild|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/ncbi-blast+|ncbi-blast+-2.8.1.ebuild|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/ncbi-tools++|ncbi-tools++-12.0.0.ebuild|sci-biology@gentoo.org sci-biology/ncbi-tools++|ncbi-tools++-18.0.0.ebuild|sci-biology@gentoo.org sci-biology/ncbi-tools++|ncbi-tools++-22.0.0.ebuild|sci-biology@gentoo.org sci-biology/phusion|phusion-2.1c.ebuild|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/prokka|prokka-1.11.ebuild|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-libs/tensorflow|tensorflow-1.5.0.ebuild|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-libs/tensorflow|tensorflow-1.7.0.ebuild|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-libs/tensorflow|tensorflow-1.8.0.ebuild|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org <<< DEL-BUG-ebuild_deprecated_eclasses >>> 5|dev-python/opal-client|opal-client-2.4.1.ebuild|versionator|sci-biology@gentoo.org 5|sci-biology/amos|amos-9999.ebuild|autotools-utils|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/clover|clover-2011.10.24.ebuild|versionator|maintainer-wanted@gentoo.org:sci-biology@gentoo.org 5|sci-biology/codonw|codonw-1.4.4-r2.ebuild|versionator|sci-biology@gentoo.org 6|sci-biology/deeptools|deeptools-2.5.0.ebuild|git-2|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/deeptools|deeptools-9999.ebuild|git-2|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/exonerate-gff3|exonerate-gff3-9999.ebuild|autotools-utils|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/germline|germline-1.5.1.ebuild|versionator|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/germline|germline-1.5.2.ebuild|versionator|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/gmap|gmap-2016.11.07.ebuild|versionator|sci-biology@gentoo.org 6|sci-biology/imagej|imagej-1.51k.ebuild|versionator|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/OBO-Edit|OBO-Edit-2.1.0.ebuild|versionator|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/OBO-Edit|OBO-Edit-2.1.1.6.ebuild|versionator|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/plinkseq|plinkseq-0.10.ebuild|autotools-utils|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/proda|proda-1.0.ebuild|versionator|sci-biology@gentoo.org 5|sci-biology/staden|staden-2.0.0_beta10.ebuild|autotools-utils|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/staden|staden-2.0.0_beta11.ebuild|autotools-utils|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/staden|staden-9999.ebuild|autotools-utils|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/wcd|wcd-0.6.3.ebuild|autotools-utils|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/wise|wise-2.4.1.ebuild|versionator|sci-biology@gentoo.org 6|sci-libs/tensorflow|tensorflow-1.8.0.ebuild|versionator|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org <<< ECU-BUG-ebuild_missing_eclasses >>> 6|sci-biology/abacas|abacas-1.3.1.ebuild|optfeature|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/augustus|augustus-3.3.2.ebuild|epatch|sci-biology@gentoo.org 6|sci-biology/bedops|bedops-2.4.26.ebuild|epatch|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/blat|blat-36.ebuild|epatch|sci-biology@gentoo.org 6|sci-biology/flexbar|flexbar-2.7.0.ebuild|flag-o-matic|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/flexbar|flexbar-3.0.0.ebuild|flag-o-matic|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/fsl|fsl-5.0.8.ebuild|epatch|sci-biology@gentoo.org 6|sci-biology/imagej|imagej-1.51k.ebuild|epatch:desktop|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/ncbi-blast+|ncbi-blast+-2.2.30.ebuild|epatch|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/ncbi-blast+|ncbi-blast+-2.2.31.ebuild|epatch|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/ncbi-blast+|ncbi-blast+-2.6.0.ebuild|epatch|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/ncbi-blast+|ncbi-blast+-2.8.1.ebuild|epatch|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/picard|picard-2.2.2.ebuild|epatch|ercpe@gentoo.org:sci-biology@gentoo.org 6|sci-biology/Rcorrector|Rcorrector-9999.ebuild|epatch|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/reapr|reapr-1.0.18.ebuild|epatch|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/repeatmasker|repeatmasker-4.0.6-r4.ebuild|optfeature|sci-biology@gentoo.org 6|sci-biology/repeatmasker|repeatmasker-4.0.8-r2.ebuild|optfeature|sci-biology@gentoo.org 6|sci-biology/SOAPdenovo2|SOAPdenovo2-241.ebuild|epatch|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/tablet-bin|tablet-bin-1.17.08.17.ebuild|versionator|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/tigr-foundation-libs|tigr-foundation-libs-2.0-r1.ebuild|epatch|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/trf-bin|trf-bin-4.09.ebuild|desktop|sci-biology@gentoo.org 6|sci-libs/lib2bit|lib2bit-0.2.1.ebuild|epatch|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-libs/tensorflow|tensorflow-1.8.0.ebuild|flag-o-matic|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org <<< ECU-BUG-ebuild_unused_eclasses >>> 6|sci-biology/abacas|abacas-1.3.1.ebuild|eutils|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/augustus|augustus-3.3.2.ebuild|eutils|sci-biology@gentoo.org 7|sci-biology/bamql|bamql-1.6.1.ebuild|eutils|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/bedops|bedops-2.4.26.ebuild|eutils|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/blat|blat-36.ebuild|eutils|sci-biology@gentoo.org 7|sci-biology/chiron|chiron-9999.ebuild|eutils|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/freebayes|freebayes-9999.ebuild|eutils|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/fsl|fsl-5.0.11.ebuild|flag-o-matic|sci-biology@gentoo.org 6|sci-biology/fsl|fsl-5.0.8.ebuild|eutils|sci-biology@gentoo.org 6|sci-biology/imagej|imagej-1.51k.ebuild|eutils|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/jellyfish|jellyfish-1.1.12.ebuild|eutils:flag-o-matic|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/jellyfish|jellyfish-2.1.3-r1.ebuild|eutils:flag-o-matic|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/jellyfish|jellyfish-2.1.4-r1.ebuild|eutils:flag-o-matic|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/jellyfish|jellyfish-2.2.10.ebuild|eutils:flag-o-matic|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/jellyfish|jellyfish-2.3.0.ebuild|eutils:flag-o-matic|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/KaKs_Calculator|KaKs_Calculator-1.2.ebuild|eutils|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/KaKs_Calculator|KaKs_Calculator-2.0.ebuild|eutils|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/kat|kat-2.4.2.ebuild|flag-o-matic|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/kat|kat-9999.ebuild|flag-o-matic|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/KING|KING-20161017.ebuild|eutils|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/megahit|megahit-9999.ebuild|eutils|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/ncbi-blast+|ncbi-blast+-2.2.30.ebuild|eutils|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/ncbi-blast+|ncbi-blast+-2.2.31.ebuild|eutils|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/ncbi-blast+|ncbi-blast+-2.6.0.ebuild|eutils|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/ncbi-blast+|ncbi-blast+-2.8.1.ebuild|eutils|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/nextclip|nextclip-1.3.1.ebuild|flag-o-matic|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/ntCard|ntCard-1.1.0.ebuild|eutils|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/ntCard|ntCard-9999.ebuild|eutils|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/nxtrim|nxtrim-9999.ebuild|eutils|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/Rcorrector|Rcorrector-9999.ebuild|eutils|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/reapr|reapr-1.0.18.ebuild|eutils|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/repeatmasker|repeatmasker-4.0.6-r4.ebuild|eutils|sci-biology@gentoo.org 6|sci-biology/repeatmasker|repeatmasker-4.0.8-r2.ebuild|eutils|sci-biology@gentoo.org 6|sci-biology/rtg-tools|rtg-tools-9999.ebuild|eutils|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/samstat|samstat-1.5.1.ebuild|eutils|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/SEECER|SEECER-0.1.3-r2.ebuild|eutils|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/seq_crumbs|seq_crumbs-0.1.9.ebuild|eutils|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/SOAPdenovo2|SOAPdenovo2-241.ebuild|eutils|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/SPAdes|SPAdes-3.13.0.ebuild|eutils|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/tigr-foundation-libs|tigr-foundation-libs-2.0-r1.ebuild|eutils|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/trf-bin|trf-bin-4.09.ebuild|eutils|sci-biology@gentoo.org 6|sci-libs/lib2bit|lib2bit-0.2.1.ebuild|eutils|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-libs/tensorflow|tensorflow-1.0.1.ebuild|eutils|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-libs/tensorflow|tensorflow-1.5.0.ebuild|eutils|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-libs/tensorflow|tensorflow-1.7.0.ebuild|eutils|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-libs/tensorflow|tensorflow-1.8.0.ebuild|eutils|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org <<< PAC-BUG-ebuild_unused_patches_simple >>> sci-biology/cluster|je_fro@gentoo.org:sci-biology@gentoo.org sci-biology/quorum|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/tablet|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org <<< PAT-BUG-ebuild_unused_patches >>> sci-biology/bowtie|bowtie-1.2.2-_ContextLss-1.1-1.4.patch|sci-biology@gentoo.org sci-biology/bowtie|bowtie-1.2.2-fix-Intel-compilation.patch|sci-biology@gentoo.org sci-biology/bowtie|bowtie-1.2.2-unbundle-seqan.patch|sci-biology@gentoo.org sci-biology/bowtie|bowtie-1.2.2-void2int.patch|sci-biology@gentoo.org sci-biology/caftools|Makefile.in.patch|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/cluster|cluster-1.38-helpmenu-fix.patch|je_fro@gentoo.org:sci-biology@gentoo.org sci-biology/fsl|fsl-5.0.4-headers.patch|sci-biology@gentoo.org sci-biology/fsl|fsl-5.0.4-setup.patch|sci-biology@gentoo.org sci-biology/fsl|fsl-5.0.6-fsldir_redux.patch|sci-biology@gentoo.org sci-biology/igv|2.3.52-remove-oracle.jdbc.patch|sci-biology@gentoo.org sci-biology/quorum|quorum-0.2.1-use-jellyfish1.patch|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/SOAPdenovo2|soapdenovo2.1|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/tablet|response.varfile|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-libs/itk|0001-BUG-Wrap-TransformFileReader-TransformFileWriter.patch|maintainer-wanted@gentoo.org:sci-biology@gentoo.org sci-libs/itk|0002-COMP-Fixed-itkQuasiNewtonOptimizerv4-wrapping-warnin.patch|maintainer-wanted@gentoo.org:sci-biology@gentoo.org sci-libs/itk|0003-COMP-Fixed-itkGradientDescentOptimizerv4-wrapping-wa.patch|maintainer-wanted@gentoo.org:sci-biology@gentoo.org sci-libs/itk|0004-COMP-Warp-OptimizerParameterScalesEstimatorTemplate.patch|maintainer-wanted@gentoo.org:sci-biology@gentoo.org sci-libs/itk|0005-make-gdcm-helper-library-static.patch|maintainer-wanted@gentoo.org:sci-biology@gentoo.org sci-libs/itk|nrrdio-linking.patch|maintainer-wanted@gentoo.org:sci-biology@gentoo.org <<< RMC-IMP-packages_full_repoman >>> dev-lang/yaggo|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org dev-perl/Algorithm-Loops|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org dev-perl/BTLib|repo.eapi-deprecated|sci-biology@gentoo.org dev-perl/Bio-BigFile|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org dev-perl/Bio-DB-Das-Chado|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org dev-perl/Bio-DB-HTS|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org dev-perl/DBIx-DBStag|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org dev-perl/Config-Std|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org dev-perl/Data-Types|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org dev-perl/Log-Cabin|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org dev-perl/Scalar-Util-Numeric|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org dev-perl/Set-IntSpan-Fast|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org dev-perl/Text-Graph|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org dev-perl/Text-ParseWords|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org dev-perl/Text-RecordParser|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org dev-perl/Time-Progress|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org dev-perl/go-db-perl|repo.eapi-deprecated|sci-biology@gentoo.org dev-perl/go-perl|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org dev-python/GOGrapher|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org dev-python/bcbio-gff|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org dev-python/ngslib|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org dev-python/opal-client|dependency.equalsversion:inherit.deprecated:repo.eapi-deprecated|sci-biology@gentoo.org dev-python/psubprocess|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org dev-python/py2bit|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org dev-python/pyBigWig|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org dev-python/pyvcf|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org dev-python/shove|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org dev-python/xopen|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org dev-util/makefile2graph|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/AlignGraph|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/Atlas-Link|KEYWORDS.missing:repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/Atlas|KEYWORDS.missing:repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/ANGLE-bin|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/Atlas2|KEYWORDS.missing:repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 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sci-biology/nwalign|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/oases|KEYWORDS.missing:repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/parafly|repo.eapi-deprecated:uri.https|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/pairagon|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/pb-honey|KEYWORDS.missing:repo.eapi-deprecated:uri.https|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/pb-jelly|KEYWORDS.missing:dependency.badmasked:repo.eapi-deprecated:uri.https|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/perga|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/phusion|KEYWORDS.missing:repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/phusion2|KEYWORDS.missing:repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/pileup|KEYWORDS.missing:repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/oncotator|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/plinkseq|KEYWORDS.missing:repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/perlprimer|repo.eapi-deprecated|sci-biology@gentoo.org sci-biology/polyphen|KEYWORDS.missing:repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/picard|KEYWORDS.missing:repo.eapi-deprecated|ercpe@gentoo.org:sci-biology@gentoo.org sci-biology/primerD|KEYWORDS.missing:repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/plink|repo.eapi-deprecated|sci-biology@gentoo.org sci-biology/prinseq-lite|KEYWORDS.missing:repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/proovread|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/prokka|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/proda|inherit.deprecated:repo.eapi-deprecated|sci-biology@gentoo.org sci-biology/prot4EST|KEYWORDS.missing:repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/psx|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/pvmsx|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/poretools|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/pyfaidx|repo.eapi-deprecated|mschu.dev@gmail.com:sci-biology@gentoo.org sci-biology/pysamstats|KEYWORDS.missing:repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/pybedtools|repo.eapi-deprecated|mschu.dev@gmail.com:sci-biology@gentoo.org sci-biology/quast|KEYWORDS.missing:repo.eapi-deprecated:uri.https|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/quicktree|repo.eapi-deprecated|sci-biology@gentoo.org sci-biology/quorum|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/reaper|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/reapr|KEYWORDS.missing:dependency.badmasked:repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/reptile|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/rnaplex|repo.eapi-deprecated|sci-biology@gentoo.org sci-biology/roche454ace2caf|KEYWORDS.missing:repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/rtg-tools|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/rmblast|file.size:repo.eapi-deprecated|sci-biology@gentoo.org sci-biology/sabre|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/sailfish|KEYWORDS.missing:repo.eapi-deprecated|sci-biology@gentoo.org:mschu.dev@gmail.com sci-biology/sambamba|KEYWORDS.missing:repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/samstat|repo.eapi-deprecated:uri.https|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/scaffold_builder|repo.eapi-deprecated:uri.https|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/rum|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/scan_for_matches|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/salmon|repo.eapi-deprecated|sci-biology@gentoo.org:mschu.dev@gmail.com sci-biology/ruffus|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/scbi_blast|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/scbi_fasta|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/scbi_fastq|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/scbi_mapreduce|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/scbi_plot|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/scbi_zcat|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/sclust|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/screed|repo.eapi-deprecated:uri.https|sci-biology@gentoo.org sci-biology/seq_crumbs|KEYWORDS.missing:repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/scythe|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/sga|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/seqclean|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/sff_dump|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/sickle|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/sgp2|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/seqtools|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/skewer-bin|repo.eapi-deprecated:uri.https|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/signalp|repo.eapi-deprecated|sci-biology@gentoo.org sci-biology/smalt-bin|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/snphylo|KEYWORDS.missing:repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/smalt|repo.eapi-deprecated:uri.https|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/snpomatic|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/snap|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/somatic-sniper|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/ssaha2-bin|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/stacks|KEYWORDS.missing:repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/staden|KEYWORDS.missing:repo.eapi-deprecated:uri.https|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/staden_doc|KEYWORDS.missing:repo.eapi-deprecated:upstream.workaround:uri.https|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/sra_sdk|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/stampy-bin|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/stringtie|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/subread|repo.eapi-deprecated:uri.https|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/tagdust|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/tclust|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/swissknife|repo.eapi-deprecated|sci-biology@gentoo.org sci-biology/tigmint|KEYWORDS.missing:repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/tigr-foundation-libs|repo.eapi-deprecated:uri.https|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/trans-abyss|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/tmhmm|repo.eapi-deprecated|sci-biology@gentoo.org sci-biology/trim_galore|KEYWORDS.missing:repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/trf-bin|repo.eapi-deprecated|sci-biology@gentoo.org sci-biology/trinityrnaseq|KEYWORDS.missing:repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/trf|repo.eapi-deprecated|sci-biology@gentoo.org sci-biology/trowel|repo.eapi-deprecated:uri.https|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/vcflib|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/trimmomatic|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/twinscan|repo.eapi-deprecated|sci-biology@gentoo.org sci-biology/vt|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/vcftools|repo.eapi-deprecated|sci-biology@gentoo.org sci-biology/verifyBamID|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/wcd|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/wgs_tools|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/weblogo|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/yaha|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/wise|file.size:inherit.deprecated:repo.eapi-deprecated|sci-biology@gentoo.org sci-biology/wgs-assembler|repo.eapi-deprecated:upstream.workaround:uri.https|sci-biology@gentoo.org sci-biology/bwa|repo.eapi-deprecated|sci-biology@gentoo.org sci-biology/gffcompare|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-libs/bloom|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-libs/fast5|KEYWORDS.missing:repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-libs/htslib-plugins|KEYWORDS.missing:repo.eapi-deprecated|sci-biology@gentoo.org sci-libs/jhdf5|KEYWORDS.missing:repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-libs/lib2bit|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-libs/libStatGen|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-libs/libmaus|repo.eapi-deprecated|sci-biology@gentoo.org sci-libs/tensorflow|KEYWORDS.missing:inherit.deprecated:repo.eapi-deprecated:upstream.workaround|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/Fastaq|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/pilon-bin|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/ntCard|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/pbbam|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/blasr|repo.eapi-deprecated|sci-biology@gentoo.org sci-biology/biobambam2|KEYWORDS.missing|sci-biology@gentoo.org sci-biology/canu|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/ParaAT|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/MolBioLib|KEYWORDS.missing|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org dev-java/htsjdk|KEYWORDS.missing:digest.unused|ercpe@gentoo.org:sci-biology@gentoo.org sci-biology/tablet-bin|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/NGSEPcore|KEYWORDS.missing|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/NGSEPplugin|KEYWORDS.missing:dependency.badmasked|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/tablet|KEYWORDS.missing|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/bowtie|repo.eapi-deprecated|sci-biology@gentoo.org sci-biology/repeatmasker|repo.eapi-deprecated|sci-biology@gentoo.org sci-biology/ncbi-tools++|repo.eapi-deprecated|sci-biology@gentoo.org sci-biology/vague-bin|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/maker|KEYWORDS.missing:repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-libs/iRODS|KEYWORDS.missing:repo.eapi-deprecated|sci-biology@gentoo.org sci-biology/portrait|KEYWORDS.missing:repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org dev-perl/Bio-EnsEMBL|KEYWORDS.missing:repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/jellyfish|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/BRAKER|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/abyss|repo.eapi-deprecated|sci-biology@gentoo.org:haskell@gentoo.org <<< SIC-BUG-ebuild_epatch_in_eapi6 >>> 6|sci-biology/bedops|bedops-2.4.26.ebuild|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/blat|blat-36.ebuild|sci-biology@gentoo.org 6|sci-biology/fsl|fsl-5.0.8.ebuild|sci-biology@gentoo.org 6|sci-biology/imagej|imagej-1.51k.ebuild|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/picard|picard-2.2.2.ebuild|ercpe@gentoo.org:sci-biology@gentoo.org 6|sci-biology/Rcorrector|Rcorrector-9999.ebuild|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/reapr|reapr-1.0.18.ebuild|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/SOAPdenovo2|SOAPdenovo2-241.ebuild|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/tigr-foundation-libs|tigr-foundation-libs-2.0-r1.ebuild|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-libs/lib2bit|lib2bit-0.2.1.ebuild|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org <<< SIC-BUG-ebuild_variables_in_homepages >>> 5|sci-biology/estscan|estscan-3.0.3.ebuild|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org <<< SIC-IMP-ebuild_insecure_git_uri_usage >>> 5|sci-biology/amos|amos-9999.ebuild|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org <<< SIC-IMP-ebuild_trailing_whitespaces >>> 5|sci-biology/gatk|gatk-3.8.1.ebuild|sci-biology@gentoo.org 5|sci-biology/gatk|gatk-9999.ebuild|sci-biology@gentoo.org 5|sci-biology/maker|maker-2.31.10.ebuild|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/seq_crumbs|seq_crumbs-0.1.9.ebuild|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org <<< SRT-BUG-ebuild_missing_zip_dependency >>> 6|sci-biology/Atlas2|Atlas2-1.4.3|http://downloads.sourceforge.net/project/atlas2/Atlas2_v1.4.3.zip|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/beagle|beagle-4.0|http://faculty.washington.edu/browning/beagle/beagle.r1399.src.zip|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/beaglecall|beaglecall-20101115|http://faculty.washington.edu/browning/beaglecall/beaglecall_1.0.1_15Nov10.src.zip|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/beaglecall|beaglecall-20101115|http://faculty.washington.edu/browning/beaglecall/beaglecall_example.zip|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/cgview-bin|cgview-bin-20131130|http://www.ualberta.ca/~stothard/downloads/cgview_comparison_tool.zip|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/conform-gt|conform-gt-1174|http://faculty.washington.edu/browning/conform-gt/conform-gt.r1174.zip|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/conrad|conrad-1|http://www.broadinstitute.org/annotation/conrad/conradSrcV1.zip|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/EBARDenovo|EBARDenovo-1.2.2|http://downloads.sourceforge.net/project/ebardenovo/EBARDenovo-1.2.2-20130404.zip|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/ensembl-tools|ensembl-tools-86|https://github.com/Ensembl/ensembl-tools/archive/release/86.zip|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/fastqc|fastqc-0.11.3|http://www.bioinformatics.babraham.ac.uk/projects/fastqc/fastqc_v0.11.3_source.zip|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/genomeview-bin|genomeview-bin-2450|http://downloads.sourceforge.net/project/genomeview/GenomeView/genomeview-2450.zip|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/graf-bin|graf-bin-20171212|http://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/GetZip.cgi?zip_name=GRAF_files.zip|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/ICC|ICC-2.0.1|http://indra.mullins.microbiol.washington.edu/cgi-bin/ICC/info.cgi?ID=ICC_v2.0.1.zip|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/IMAGE|IMAGE-2.4.1|http://sourceforge.net/projects/image2/files/IMAGE_version2.4.1_64bit.zip|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/imagej|imagej-1.51k|http://imagej.nih.gov/ij/download/src/ij151k-src.zip|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/imagej|imagej-1.51k|http://wsr.imagej.net/distros/cross-platform/ij150.zip|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 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5|sci-biology/wgs-assembler|wgs-assembler-8.3_rc2|http://sourceforge.net/projects/wgs-assembler/files/wgs-assembler/wgs-8.3/wgs-8.3rc2.tar.bz2|sci-biology@gentoo.org|610094:715874:731860:739486 <<< TRW-IMP-ebuild_leading_trailing_whitespaces_in_variables >>> sci-biology/proda|proda-1.0.ebuild|IUSE|sci-biology@gentoo.org <<< WWT-BUG-ebuild_homepage_http_statuscode >>> 6|404|dev-perl/Bio-EnsEMBL|Bio-EnsEMBL-9999|https://metacpan.org/release/Bio-EnsEMBL|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|404|dev-perl/BTLib|BTLib-0.19|https://metacpan.org/release/BTLib|sci-biology@gentoo.org 5|000|dev-python/GOGrapher|GOGrapher-9999|https://projects.dbbe.musc.edu/trac/GOGrapher|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|000|sci-biology/AlignGraph|AlignGraph-9999|http://bioinformatics.oxfordjournals.org/content/30/12/i319.long|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|404|sci-biology/arachne|arachne-46233|https://www.broadinstitute.org/crd/wiki|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|000|sci-biology/bambino|bambino-1.02|https://cgwb.nci.nih.gov/goldenPath/bamview/documentation/bam_utils.html|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|000|sci-biology/bambino|bambino-1.02|https://cgwb.nci.nih.gov/goldenPath/bamview/documentation/index.html|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|000|sci-biology/bambino|bambino-1.06|https://cgwb.nci.nih.gov/goldenPath/bamview/documentation/bam_utils.html|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|000|sci-biology/bambino|bambino-1.06|https://cgwb.nci.nih.gov/goldenPath/bamview/documentation/index.html|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|500|sci-biology/biopieces|biopieces-0.51|http://code.google.com/p/biopieces|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|500|sci-biology/biopieces|biopieces-9999|http://code.google.com/p/biopieces|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|404|sci-biology/blue|blue-1.1.2|http://www.bioinformatics.csiro.au/blue|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|404|sci-biology/blue|blue-1.1.3|http://www.bioinformatics.csiro.au/blue|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|404|sci-biology/bx-python|bx-python-0.7.2|https://bitbucket.org/james_taylor/bx-python/wiki/Home|mschu.dev@gmail.com:sci-biology@gentoo.org 5|404|sci-biology/bx-python|bx-python-9999|https://bitbucket.org/james_taylor/bx-python/wiki/Home|mschu.dev@gmail.com:sci-biology@gentoo.org 5|000|sci-biology/cdbfasta|cdbfasta-0.1|http://compbio.dfci.harvard.edu/tgi/software|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|404|sci-biology/cd-hit-auxtools|cd-hit-auxtools-0.5|http://weizhong-lab.ucsd.edu/cd-hit/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|404|sci-biology/cd-hit|cd-hit-4.6.5|http://weizhong-lab.ucsd.edu/cd-hit|sci-biology@gentoo.org 5|000|sci-biology/clover|clover-2011.10.24|http://zlab.bu.edu/clover/|maintainer-wanted@gentoo.org:sci-biology@gentoo.org|142269 5|000|sci-biology/dawg|dawg-1.1.2|http://scit.us/projects/dawg/|sci-biology@gentoo.org|230649 5|000|sci-biology/erpin|erpin-5.5b|http://tagc.univ-mrs.fr/erpin/|sci-biology@gentoo.org 5|000|sci-biology/ffindex|ffindex-0.9.9.6|http://www.splashground.de/~andy/programs/FFindex|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|404|sci-biology/fgap-bin|fgap-bin-1.8.1|http://www.bioinfo.ufpr.br/fgap|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|404|sci-biology/fgap|fgap-1.8.1|http://www.bioinfo.ufpr.br/fgap|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|404|sci-biology/jannovar|jannovar-0.17|http://compbio.charite.de/contao/index.php/jannovar.html|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|403|sci-biology/KaKs_Calculator|KaKs_Calculator-2.0|https://www.sciencedirect.com/science/article/pii/S1672022910600083|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|000|sci-biology/karect|karect-1.0.0|http://bioinformatics.oxfordjournals.org/content/31/21/3421.abstract|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|000|sci-biology/MagicViewer|MagicViewer-1.2.1|http://bioinformatics.zj.cn/magicviewer|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|000|sci-biology/MaSuRCA|MaSuRCA-3.2.2|http://bioinformatics.oxfordjournals.org/content/29/21/2669|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|000|sci-biology/mavid|mavid-2.0.4|http://baboon.math.berkeley.edu/mavid/|sci-biology@gentoo.org|207250 6|000|sci-biology/megahit|megahit-9999|http://bioinformatics.oxfordjournals.org/content/31/10/1674.abstract|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|000|sci-biology/mgblast|mgblast-0.1|http://compbio.dfci.harvard.edu/tgi/software/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|000|sci-biology/miranda|miranda-3.3a|http://www.microrna.org/|sci-biology@gentoo.org|144316 5|404|sci-biology/mrsfast|mrsfast-2.6.0.4|http://mrsfast.sourceforge.net/Home|sci-biology@gentoo.org 5|000|sci-biology/nrcl|nrcl-110625|http://compbio.dfci.harvard.edu/tgi/software/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|403|sci-biology/ParaAT|ParaAT-1.0|https://www.sciencedirect.com/science/article/pii/S0006291X12003518|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|000|sci-biology/plinkseq|plinkseq-0.10|http://atgu.mgh.harvard.edu/plinkseq|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|000|sci-biology/plinkseq|plinkseq-9999|http://atgu.mgh.harvard.edu/plinkseq|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|500|sci-biology/prot4EST|prot4EST-3.1b|http://www.compsysbio.org/lab/?q=prot4EST|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|000|sci-biology/psx|psx-0.1|http://compbio.dfci.harvard.edu/tgi/software/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|000|sci-biology/pvmsx|pvmsx-0.1|http://compbio.dfci.harvard.edu/tgi/software/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|000|sci-biology/reptile|reptile-1.1|http://aluru-sun.ece.iastate.edu/doku.php?id=reptile|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|000|sci-biology/sclust|sclust-0.1|http://compbio.dfci.harvard.edu/tgi/software/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|000|sci-biology/seqclean|seqclean-110625|http://compbio.dfci.harvard.edu/tgi/software/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|000|sci-biology/tclust|tclust-110625|http://compbio.dfci.harvard.edu/tgi/software/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|000|sci-biology/zmsort|zmsort-110625|http://compbio.dfci.harvard.edu/tgi/software/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org <<< WWT-BUG-ebuild_homepage_upstream_shutdown >>> 6|301|sci-biology/ampliconnoise|ampliconnoise-1.27|http://code.google.com/p/ampliconnoise/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|500|sci-biology/biopieces|biopieces-0.51|http://code.google.com/p/biopieces|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|500|sci-biology/biopieces|biopieces-9999|http://code.google.com/p/biopieces|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|301|sci-biology/CAT|CAT-1.3|http://code.google.com/p/composition-analysis-toolkit|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|301|sci-biology/est2assembly|est2assembly-1.08|http://code.google.com/p/est2assembly/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|301|sci-biology/est2assembly|est2assembly-9999|http://code.google.com/p/est2assembly/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|200|sci-biology/idba|idba-1.1.1|https://code.google.com/archive/p/hku-idba|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|301|sci-biology/KaKs_Calculator|KaKs_Calculator-1.2|https://code.google.com/p/kaks-calculator|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|301|sci-biology/KaKs_Calculator|KaKs_Calculator-2.0|https://code.google.com/p/kaks-calculator|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|301|sci-biology/ParaAT|ParaAT-1.0|https://code.google.com/p/paraat|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|301|sci-biology/STAR|STAR-9999|http://code.google.com/p/rna-star/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org|696714:716300:736056:741152 5|301|sci-biology/wcd|wcd-0.6.3|http://code.google.com/p/wcdest/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org <<< WWT-IMP-ebuild_homepage_301_redirections >>> 6|200|dev-python/bcbio-gff|bcbio-gff-0.6.4.ebuild|https://pypi.python.org/pypi/bcbio-gff|https://pypi.org/project/bcbio-gff/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|200|dev-python/ngslib|ngslib-1.1.19.ebuild|https://pypi.python.org/pypi/ngslib|https://pypi.org/project/ngslib/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|404|dev-python/opal-client|opal-client-2.4.1.ebuild|http://www.nbcr.net/data/docs/opal/documentation.html|https://meme.nbcr.net/data/docs/opal/documentation.html|sci-biology@gentoo.org 5|404|dev-python/psubprocess|psubprocess-0.1.2.ebuild|http://bioinf.comav.upv.es/psubprocess|https://bioinf.comav.upv.es/psubprocess|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|200|dev-python/py2bit|py2bit-0.2.1.ebuild|https://github.com/dpryan79/py2bit|https://github.com/deeptools/py2bit|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|200|dev-python/pyBigWig|pyBigWig-0.3.4.ebuild|https://github.com/dpryan79/pyBigWig|https://github.com/deeptools/pyBigWig|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|200|dev-python/pyvcf|pyvcf-0.6.8.ebuild|https://pypi.python.org/pypi/PyVCF|https://pypi.org/project/PyVCF/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|200|dev-python/shove|shove-0.6.6.ebuild|https://pypi.python.org/pypi/shove|https://pypi.org/project/shove/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|200|dev-python/xopen|xopen-0.1.1.ebuild|https://pypi.python.org/pypi/xopen|https://pypi.org/project/xopen/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|200|sci-biology/act-bin|act-bin-17.0.1.ebuild|http://www.sanger.ac.uk/science/tools/artemis-comparison-tool-act|https://www.sanger.ac.uk/tool/artemis-comparison-tool-act//|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|200|sci-biology/aghermann|aghermann-1.1.2.ebuild|http://johnhommer.com/academic/code/aghermann|http://johnhommer.com/academic/code/aghermann/|johnhommer@gmail.com:sci-biology@gentoo.org 6|301|sci-biology/ampliconnoise|ampliconnoise-1.27.ebuild|http://code.google.com/p/ampliconnoise/|http://code.google.com/p/ampliconnoise/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|200|sci-biology/ANGLE-bin|ANGLE-bin-20080813-r1.ebuild|http://bioinformatics.cenargen.embrapa.br/portrait/download|http://bioinformatics.cenargen.embrapa.br/portrait/download/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|200|sci-biology/angsd|angsd-9999.ebuild|http://www.popgen.dk/angsd|http://www.popgen.dk/angsd/index.php/Main_Page|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|404|sci-biology/argo|argo-1.0.24.ebuild|http://www.broadinstitute.org/annotation/argo2|https://www.broadinstitute.org/annotation/argo2|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|000|sci-biology/argo|argo-1.0.24.ebuild|http://www.broadinstitute.org/annotation/argo|https://archive.broadinstitute.org/annotation/argo|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|404|sci-biology/argo-bin|argo-bin-1.0.31.ebuild|http://www.broadinstitute.org/annotation/argo2|https://www.broadinstitute.org/annotation/argo2|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|000|sci-biology/argo-bin|argo-bin-1.0.31.ebuild|http://www.broadinstitute.org/annotation/argo|https://archive.broadinstitute.org/annotation/argo|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|404|sci-biology/artemis|artemis-9999.ebuild|http://www.sanger.ac.uk/resources/software/artemis|https://www.sanger.ac.uk/science/search-tools-and-software|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|200|sci-biology/autoeditor|autoeditor-1.20.ebuild|http://sourceforge.net/apps/mediawiki/amos/index.php?title=AutoEditor|https://sourceforge.net/projects/amos/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|200|sci-biology/bambus|bambus-2.33.ebuild|http://sourceforge.net/apps/mediawiki/amos/index.php?title=AMOS|https://sourceforge.net/projects/amos/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|404|sci-biology/bambus|bambus-2.33.ebuild|http://www.tigr.org/software/bambus|https://www.jcvi.org/cms/research/software/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|200|sci-biology/blat|blat-36.ebuild|http://www.cse.ucsc.edu/~kent/|https://users.soe.ucsc.edu/~kent/|sci-biology@gentoo.org 5|404|sci-biology/caftools|caftools-2.0.2.ebuild|http://www.sanger.ac.uk/resources/software/caf|https://www.sanger.ac.uk/science/search-tools-and-software|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|200|sci-biology/CAT|CAT-1.3.ebuild|http://code.google.com/p/composition-analysis-toolkit|https://code.google.com/archive/p/composition-analysis-toolkit|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|200|sci-biology/cd-hit|cd-hit-4.6.5.ebuild|http://weizhongli-lab.org/cd-hit|http://weizhongli-lab.org/cd-hit/|sci-biology@gentoo.org 5|200|sci-biology/cegma|cegma-2.5.ebuild|http://korflab.ucdavis.edu/datasets/cegma|http://korflab.ucdavis.edu/datasets/cegma/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|200|sci-biology/cg-cat|cg-cat-20150130.ebuild|http://bibiserv.techfak.uni-bielefeld.de/cgcat|https://bibiserv.cebitec.uni-bielefeld.de/cgcat|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|200|sci-biology/cgview-bin|cgview-bin-20131130.ebuild|http://stothard.afns.ualberta.ca/downloads/CCT|http://stothard.afns.ualberta.ca/downloads/CCT/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|200|sci-biology/cluster|cluster-1.52a.ebuild|http://bonsai.hgc.jp/~mdehoon/software/cluster|http://bonsai.hgc.jp/~mdehoon/software/cluster/|je_fro@gentoo.org:sci-biology@gentoo.org 6|200|sci-biology/cnrun|cnrun-2.1.0.ebuild|http://johnhommer.com/academic/code/cnrun|http://johnhommer.com/academic/code/cnrun/|johnhommer@gmail.com:sci-biology@gentoo.org 5|200|sci-biology/conifer|conifer-0.2.2.ebuild|http://conifer.sf.net|http://conifer.sourceforge.net/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|404|sci-biology/conrad|conrad-1.ebuild|http://www.broadinstitute.org/annotation/conrad|https://www.broadinstitute.org/annotation/conrad|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|200|sci-biology/cramtools|cramtools-3.0.ebuild|http://www.ebi.ac.uk/ena/software/cram-toolkit|https://ena-docs.readthedocs.io/en/latest/retrieval/programmatic-access.html#cram-format|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|200|sci-biology/cross_genome|cross_genome-20140822.ebuild|http://www.sanger.ac.uk/science/tools/crossgenome|https://www.sanger.ac.uk/tool/crossgenome/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|200|sci-biology/deeptools|deeptools-2.5.0.ebuild|https://github.com/fidelram/deepTools|https://github.com/deeptools/deepTools|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|200|sci-biology/diamond|diamond-0.9.19.ebuild|http://ab.inf.uni-tuebingen.de/software/diamond|https://www.wsi.uni-tuebingen.de/lehrstuehle/algorithms-in-bioinformatics/software/diamond/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|200|sci-biology/EBARDenovo|EBARDenovo-1.2.2.ebuild|http://ebardenovo.sourceforge.net|https://sourceforge.net/projects/ebardenovo/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|200|sci-biology/ensembl-tools|ensembl-tools-86.ebuild|http://www.ensembl.org/info/docs/tools/vep/script|http://www.ensembl.org/info/docs/tools/vep/script/index.html|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|410|sci-biology/ePCR|ePCR-2.3.12.ebuild|http://www.ncbi.nlm.nih.gov/tools/epcr/|https://www.ncbi.nlm.nih.gov/tools/epcr/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|200|sci-biology/est2assembly|est2assembly-1.08.ebuild|http://code.google.com/p/est2assembly/|https://code.google.com/archive/p/est2assembly|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|404|sci-biology/ESTate|ESTate-0.5.ebuild|http://www.ebi.ac.uk/~guy/estate|https://www.ebi.ac.uk/~guy/estate|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|200|sci-biology/eugene|eugene-4.1d.ebuild|http://www.inra.fr/mia/T/EuGene/|https://www.inrae.fr/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|000|sci-biology/eval|eval-2.2.8.ebuild|http://mblab.wustl.edu/software.html|https://mblab.wustl.edu/software.html|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|200|sci-biology/exomiser-bin|exomiser-bin-7.2.1.ebuild|http://www.sanger.ac.uk/science/tools/exomiser|https://www.sanger.ac.uk/tool/exomiser/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|200|sci-biology/fastdnaml|fastdnaml-1.2.2_p10.ebuild|http://directory.fsf.org/project/fastDNAml/|https://directory.fsf.org/wiki/FastDNAml|sci-biology@gentoo.org 5|404|sci-biology/gap2caf|gap2caf-2.1.0.ebuild|http://www.sanger.ac.uk/resources/software/caf/|https://www.sanger.ac.uk/science/search-tools-and-software|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|200|sci-biology/gatk|gatk-3.8.1.ebuild|http://www.broadinstitute.org/gsa/wiki/index.php/The_Genome_Analysis_Toolkit|https://gatk.broadinstitute.org/hc/en-us|sci-biology@gentoo.org 6|200|sci-biology/gemini|gemini-9999.ebuild|http://gemini.readthedocs.org/en/latest|https://gemini.readthedocs.io/en/latest/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|000|sci-biology/geneid|geneid-1.4.4.ebuild|http://genome.crg.es/software/geneid|https://genome.crg.cat/software/geneid|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|404|sci-biology/generecon|generecon-1.2.1-r1.ebuild|http://www.daimi.au.dk/~mailund/GeneRecon/|https://users-cs.au.dk/~mailund/GeneRecon/|lucas.chiesa@gmail.com:sci-biology@gentoo.org 6|200|sci-biology/germline|germline-1.5.1.ebuild|http://www.cs.columbia.edu/~gusev/germline|http://www.cs.columbia.edu/~gusev/germline/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|000|sci-biology/gfftools|gfftools-0.98d.ebuild|http://genome.crg.es/software/gfftools/GFF2PS.html|https://genome.crg.cat/software/gfftools/GFF2PS.html|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|200|sci-biology/hexamer|hexamer-19990330.ebuild|http://www.sanger.ac.uk/resources/software|https://www.sanger.ac.uk/science/tools/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|200|sci-biology/igv|igv-2.3.47.ebuild|http://www.broadinstitute.org/igv/|http://software.broadinstitute.org/software/igv/|sci-biology@gentoo.org 5|200|sci-biology/IMAGE|IMAGE-2.4.1.ebuild|https://sourceforge.net/apps/mediawiki/image2|https://sourceforge.net/projects/image2/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|200|sci-biology/imagej|imagej-1.51k.ebuild|http://rsb.info.nih.gov/ij/|https://imagej.nih.gov/ij/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|200|sci-biology/jannovar-bin|jannovar-bin-0.17.ebuild|http://compbio.charite.de|http://charite.github.io/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|301|sci-biology/KaKs_Calculator|KaKs_Calculator-1.2.ebuild|https://code.google.com/p/kaks-calculator|https://code.google.com/p/kaks-calculator|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|200|sci-biology/khmer|khmer-0.8.ebuild|https://github.com/ged-lab/khmer|https://github.com/dib-lab/khmer|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|200|sci-biology/kraken|kraken-1.0.ebuild|http://genomebiology.com/2014/15/3/R46|https://genomebiology.biomedcentral.com/articles/10.1186/gb-2014-15-3-r46|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|200|sci-biology/manatee-igs|manatee-igs-2.23.1.ebuild|http://manatee.sourceforge.net/igs|http://manatee.sourceforge.net/igs/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|200|sci-biology/merlin|merlin-1.1.2.ebuild|http://www.sph.umich.edu/csg/abecasis/Merlin/|http://csg.sph.umich.edu/abecasis/Merlin/|sci-biology@gentoo.org 5|200|sci-biology/MeV|MeV-4.8.1.ebuild|http://mev-tm4.sourceforge.net|https://sourceforge.net/projects/mev-tm4/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|404|sci-biology/MochiView|MochiView-1.45.ebuild|http://johnsonlab.ucsf.edu/mochi.html|http://www.johnsonlab.ucsf.edu/mochi.html|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|200|sci-biology/mothur|mothur-1.36.1.ebuild|http://www.mothur.org/|http://mothur.org/|sci-biology@gentoo.org 6|200|sci-biology/msautil|msautil-1.1-r1.ebuild|http://bioresearch.byu.edu/msa|http://bioresearch.byu.edu/msa/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|400|sci-biology/ncbi-blast+|ncbi-blast+-2.2.30.ebuild|http://www.ncbi.nlm.nih.gov/books/bv.fcgi?rid=toolkit|https://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/book/redirector.cgi?url=%2Fbooks%2Fbv.fcgi%3Frid%3Dtoolkit|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|400|sci-biology/ncbi-tools++|ncbi-tools++-12.0.0.ebuild|http://www.ncbi.nlm.nih.gov/books/bv.fcgi?rid=toolkit|https://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/book/redirector.cgi?url=%2Fbooks%2Fbv.fcgi%3Frid%3Dtoolkit|sci-biology@gentoo.org 6|404|sci-biology/ngs_backbone|ngs_backbone-1.4.0.ebuild|http://bioinf.comav.upv.es/ngs_backbone/index.html|https://bioinf.comav.upv.es/ngs_backbone/index.html|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|200|sci-biology/nwalign|nwalign-0.3.1.ebuild|https://pypi.python.org/pypi/nwalign|https://pypi.org/project/nwalign/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|200|sci-biology/OBO-Edit|OBO-Edit-2.1.0.ebuild|http://www.oboedit.org/|http://oboedit.org/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|200|sci-biology/ParaAT|ParaAT-1.0.ebuild|http://cbb.big.ac.cn/software|http://cbb.big.ac.cn/Software|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|200|sci-biology/ParaAT|ParaAT-1.0.ebuild|https://code.google.com/p/paraat|https://code.google.com/archive/p/paraat|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|404|sci-biology/phusion2|phusion2-3.0.ebuild|http://www.sanger.ac.uk/resources/software/phusion/|https://www.sanger.ac.uk/science/search-tools-and-software|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|404|sci-biology/phusion|phusion-2.1c.ebuild|http://www.sanger.ac.uk/resources/software/phusion/|https://www.sanger.ac.uk/science/search-tools-and-software|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|404|sci-biology/pileup|pileup-0.6.ebuild|http://www.sanger.ac.uk/resources/software/ssaha2/|https://www.sanger.ac.uk/science/search-tools-and-software|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|200|sci-biology/portrait|portrait-1.1.ebuild|http://bioinformatics.cenargen.embrapa.br/portrait|http://bioinformatics.cenargen.embrapa.br/portrait/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|200|sci-biology/prot4EST|prot4EST-3.1b.ebuild|http://www.biomedcentral.com/1471-2105/5/187|https://bmcbioinformatics.biomedcentral.com/articles/10.1186/1471-2105-5-187|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|200|sci-biology/pyfaidx|pyfaidx-0.4.8.1.ebuild|https://pypi.python.org/pypi/pyfaidx|https://pypi.org/project/pyfaidx/|mschu.dev@gmail.com:sci-biology@gentoo.org 6|200|sci-biology/pysamstats|pysamstats-0.24.2.ebuild|https://pypi.python.org/pypi/pysamstats|https://pypi.org/project/pysamstats/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|404|sci-biology/quicktree|quicktree-1.1-r1.ebuild|http://www.sanger.ac.uk/Software/analysis/quicktree/|https://www.sanger.ac.uk/science/search-tools-and-software|sci-biology@gentoo.org 6|200|sci-biology/reapr|reapr-1.0.18.ebuild|http://www.sanger.ac.uk/science/tools/reapr|https://www.sanger.ac.uk/tool/reapr/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|200|sci-biology/Scaffolder-evaluation|Scaffolder-evaluation-9999.ebuild|http://genomebiology.com/2014/15/3/R42|https://genomebiology.biomedcentral.com/articles/10.1186/gb-2014-15-3-r42|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|200|sci-biology/screed|screed-0.9.ebuild|http://github.com/ged-lab/screed/|https://github.com/dib-lab/screed|sci-biology@gentoo.org 5|200|sci-biology/screed|screed-0.9.ebuild|https://pypi.python.org/pypi/screed|https://pypi.org/project/screed/|sci-biology@gentoo.org 6|200|sci-biology/seqtools|seqtools-4.44.1.ebuild|http://www.sanger.ac.uk/resources/software/seqtools|https://www.sanger.ac.uk/tool/seqtools//|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|000|sci-biology/sgp2|sgp2-1.1.ebuild|http://genome.crg.es/software/sgp2/|https://genome.crg.cat/software/sgp2/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|404|sci-biology/smalt-bin|smalt-bin-0.7.4.ebuild|http://www.sanger.ac.uk/resources/software/smalt/|https://www.sanger.ac.uk/science/search-tools-and-software|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|404|sci-biology/smalt|smalt-0.7.6.ebuild|http://www.sanger.ac.uk/resources/software/smalt/|https://www.sanger.ac.uk/science/search-tools-and-software|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|200|sci-biology/snphylo|snphylo-20140701.ebuild|http://chibba.pgml.uga.edu/snphylo|http://chibba.pgml.uga.edu/snphylo/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|404|sci-biology/ssaha2-bin|ssaha2-bin-2.5.5.ebuild|http://www.sanger.ac.uk/resources/software/ssaha2|https://www.sanger.ac.uk/science/search-tools-and-software|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|200|sci-biology/STAR|STAR-9999.ebuild|http://code.google.com/p/rna-star/|https://code.google.com/archive/p/rna-star|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|200|sci-biology/tagdust|tagdust-20101028.ebuild|http://genome.gsc.riken.jp/osc/english/dataresource|http://genome.gsc.riken.jp/osc/english/dataresource/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|000|sci-biology/twinscan|twinscan-4.1.2-r1.ebuild|http://mblab.wustl.edu/software/twinscan|https://mblab.wustl.edu/software/twinscan|sci-biology@gentoo.org 5|301|sci-biology/wcd|wcd-0.6.3.ebuild|http://code.google.com/p/wcdest/|http://code.google.com/p/wcdest/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|200|sci-biology/zmap|zmap-2.12.0.ebuild|http://www.sanger.ac.uk/science/tools/zmap|https://www.sanger.ac.uk/tool/zmap//|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|200|sci-libs/itk|itk-5.0.1.ebuild|http://www.itk.org|https://itk.org/|maintainer-wanted@gentoo.org:sci-biology@gentoo.org <<< WWT-IMP-ebuild_homepage_redirection_http_to_https >>> 5|sci-biology/align_to_scf|align_to_scf-1.06.ebuild|http://genome.imb-jena.de/software/roche454ace2caf|https://genome.imb-jena.de/software/roche454ace2caf/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/amos|amos-9999.ebuild|http://sourceforge.net/projects/amos|https://sourceforge.net/projects/amos|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/augustus|augustus-3.3.2.ebuild|http://bioinf.uni-greifswald.de/augustus|https://bioinf.uni-greifswald.de/augustus/|sci-biology@gentoo.org 5|sci-biology/bambus|bambus-2.33.ebuild|http://sourceforge.net/projects/amos/files/bambus|https://sourceforge.net/projects/amos/files/bambus|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/BBmap|BBmap-34.97.ebuild|http://sourceforge.net/projects/bbmap/|https://sourceforge.net/projects/bbmap/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/BRAKER|BRAKER-2.1.2.ebuild|http://bioinf.uni-greifswald.de/augustus/downloads|https://bioinf.uni-greifswald.de/augustus/downloads/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/BRAKER|BRAKER-2.1.2.ebuild|http://bioinf.uni-greifswald.de/bioinf/braker|https://bioinf.uni-greifswald.de/bioinf/braker/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/breakdancer|breakdancer-9999.ebuild|http://gmt.genome.wustl.edu/packages/breakdancer|https://gmt.genome.wustl.edu/packages/breakdancer/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/caftools|caftools-2.0.2.ebuild|http://www.ncbi.nlm.nih.gov/pmc/articles/PMC310697|https://www.ncbi.nlm.nih.gov/pmc/articles/PMC310697/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/CAT|CAT-1.3.ebuild|http://bigd.big.ac.cn/tools/cat|https://bigd.big.ac.cn/tools/cat|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/conrad|conrad-1.ebuild|http://sourceforge.net/projects/conradcrf|https://sourceforge.net/projects/conradcrf|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/coral|coral-1.4.ebuild|http://www.cs.helsinki.fi/u/lmsalmel/coral|https://www.cs.helsinki.fi/u/lmsalmel/coral/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/estscan|estscan-3.0.3.ebuild|http://sourceforge.net/projects/estscan/|https://sourceforge.net/projects/estscan/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/FLASH|FLASH-1.2.9.ebuild|http://sourceforge.net/projects/flashpage|https://sourceforge.net/projects/flashpage|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/full_lengther_next|full_lengther_next-0.6.2.ebuild|http://www.rubydoc.info/gems/full_lengther_next|https://www.rubydoc.info/gems/full_lengther_next|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/genepop|genepop-4.2.1.ebuild|http://genepop.curtin.edu.au/|https://genepop.curtin.edu.au/|sci-biology@gentoo.org 5|sci-biology/genepop|genepop-4.2.1.ebuild|http://kimura.univ-montp2.fr/~rousset/Genepop.htm|https://kimura.univ-montp2.fr/~rousset/Genepop.htm|sci-biology@gentoo.org 5|sci-biology/glean|glean-1.0.1.ebuild|http://sourceforge.net/projects/glean-gene|https://sourceforge.net/projects/glean-gene|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/graf-bin|graf-bin-20171212.ebuild|http://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/Software.cgi|https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/Software.cgi|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/grappa|grappa-2.0.ebuild|http://www.cs.unm.edu/~moret/GRAPPA/|https://www.cs.unm.edu/~moret/GRAPPA/|sci-biology@gentoo.org 5|sci-biology/InterMine|InterMine-0.98.ebuild|http://github.com/intermine/intermine|https://github.com/intermine/intermine|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/jellyfish|jellyfish-1.1.12.ebuild|http://www.cbcb.umd.edu/software/jellyfish|https://www.cbcb.umd.edu/software/jellyfish/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/jigsaw|jigsaw-3.2.10.ebuild|http://www.cbcb.umd.edu/software/jigsaw|https://www.cbcb.umd.edu/software/jigsaw/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/KaKs_Calculator|KaKs_Calculator-1.2.ebuild|http://bigd.big.ac.cn/tools/kaks|https://bigd.big.ac.cn/tools/kaks|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/KING|KING-20161017.ebuild|http://people.virginia.edu/~wc9c/KING|https://people.virginia.edu/~wc9c/KING/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/kraken|kraken-1.0.ebuild|http://ccb.jhu.edu/software/kraken|https://ccb.jhu.edu/software/kraken/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/metaseq|metaseq-0.5.3.ebuild|http://pythonhosted.org/metaseq/|https://pythonhosted.org/metaseq/|mschu.dev@gmail.com:sci-biology@gentoo.org 5|sci-biology/mip-scaffolder|mip-scaffolder-0.6.ebuild|http://www.cs.helsinki.fi/u/lmsalmel/mip-scaffolder|https://www.cs.helsinki.fi/u/lmsalmel/mip-scaffolder/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/oases|oases-0.2.08.ebuild|http://www.ebi.ac.uk/~zerbino/oases|https://www.ebi.ac.uk/~zerbino/oases/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/ORFcor|ORFcor-20130507.ebuild|http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0058387|https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0058387|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/parafly|parafly-20130121.ebuild|http://sourceforge.net/projects/transdecoder/|https://sourceforge.net/projects/transdecoder/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/perga|perga-9999.ebuild|http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4252104|https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4252104/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/picard|picard-1.141.ebuild|http://broadinstitute.github.io/picard|https://broadinstitute.github.io/picard/|ercpe@gentoo.org:sci-biology@gentoo.org 5|sci-biology/pybedtools|pybedtools-0.6.9.ebuild|http://pythonhosted.org/pybedtools/|https://pythonhosted.org/pybedtools/|mschu.dev@gmail.com:sci-biology@gentoo.org 5|sci-biology/reaper|reaper-15348.ebuild|http://www.ebi.ac.uk/~stijn/reaper|https://www.ebi.ac.uk/~stijn/reaper/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/sambamba|sambamba-0.6.5.ebuild|http://lomereiter.github.io/sambamba|https://lomereiter.github.io/sambamba/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/scaffold_builder|scaffold_builder-20131122-r1.ebuild|http://edwards.sdsu.edu/scaffold_builder|https://edwards.sdsu.edu/scaffold_builder/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/scaffold_builder|scaffold_builder-20131122-r1.ebuild|http://sourceforge.net/projects/scaffold-b|https://sourceforge.net/projects/scaffold-b|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/scan_for_matches|scan_for_matches-20121220.ebuild|http://blog.theseed.org/servers/2010/07/scan-for-matches.html|https://blog.theseed.org/servers/2010/07/scan-for-matches.html|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/skewer-bin|skewer-bin-0.1.104.ebuild|http://sourceforge.net/projects/skewer|https://sourceforge.net/projects/skewer|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/SOAPdenovo2|SOAPdenovo2-241.ebuild|http://gigascience.biomedcentral.com/articles/10.1186/2047-217X-1-18|https://gigascience.biomedcentral.com/articles/10.1186/2047-217X-1-18|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/SolexaQA|SolexaQA-2.2.ebuild|http://sourceforge.net/projects/clview|https://sourceforge.net/projects/clview|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/SPAdes|SPAdes-3.13.0.ebuild|http://cab.spbu.ru/software/spades|https://cab.spbu.ru/software/spades/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/sra_sdk|sra_sdk-2.2.2a.ebuild|http://trace.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?cmd=show&f=faspftp_runs_v1&m=downloads&s=download_sra|https://trace.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?cmd=show&f=faspftp_runs_v1&m=downloads&s=download_sra|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/staden|staden-2.0.0_beta10.ebuild|http://sourceforge.net/projects/staden|https://sourceforge.net/projects/staden|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/staden|staden-9999.ebuild|http://sourceforge.net/projects/staden/|https://sourceforge.net/projects/staden/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/staden_doc|staden_doc-2.0.0_beta11.ebuild|http://sourceforge.net/projects/staden|https://sourceforge.net/projects/staden|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/trim_galore|trim_galore-0.4.0.ebuild|http://www.bioinformatics.babraham.ac.uk/projects/trim_galore|https://www.bioinformatics.babraham.ac.uk/projects/trim_galore/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/trowel|trowel-0.1.4.1.ebuild|http://sourceforge.net/projects/trowel-ec|https://sourceforge.net/projects/trowel-ec|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/wgs-assembler|wgs-assembler-8.3_rc2.ebuild|http://sourceforge.net/projects/wgs-assembler/|https://sourceforge.net/projects/wgs-assembler/|sci-biology@gentoo.org 5|sci-biology/wgs_tools|wgs_tools-9999.ebuild|http://www.ncbi.nlm.nih.gov/books/NBK279690/|https://www.ncbi.nlm.nih.gov/books/NBK279690/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/wgs_tools|wgs_tools-9999.ebuild|http://www.ncbi.nlm.nih.gov/genbank/wgs|https://www.ncbi.nlm.nih.gov/genbank/wgs/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/wise|wise-2.4.1.ebuild|http://www.ebi.ac.uk/~birney/wise2|https://www.ebi.ac.uk/~birney/wise2/|sci-biology@gentoo.org <<< WWT-IMP-ebuild_homepage_redirection_missing_slash_www >>> 6|sci-biology/hisat2|hisat2-2.0.5.ebuild|https://ccb.jhu.edu/software/hisat2|https://ccb.jhu.edu/software/hisat2/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/nextclip|nextclip-1.3.1.ebuild|https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3928519|https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3928519/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/stringtie|stringtie-1.3.4d.ebuild|https://ccb.jhu.edu/software/stringtie|https://ccb.jhu.edu/software/stringtie/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/tablet|tablet-1.17.08.17.ebuild|https://ics.hutton.ac.uk/tablet|https://ics.hutton.ac.uk/tablet/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/tablet-bin|tablet-bin-1.17.08.17.ebuild|https://ics.hutton.ac.uk/tablet|https://ics.hutton.ac.uk/tablet/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org <<< WWT-IMP-ebuild_homepage_unsync >>> 2|sci-biology/amos|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 2|sci-biology/idba|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 2|sci-biology/jellyfish|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 2|sci-biology/jtreeview|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 2|sci-biology/KaKs_Calculator|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 2|sci-biology/staden|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 2|sci-biology/bowtie|sci-biology@gentoo.org 2|sci-biology/genepop|sci-biology@gentoo.org