<<< ebuild_homepage_bad_statuscode >>> 7|403|2023-07-04|sci-biology/AlignGraph|AlignGraph-9999.ebuild|http://bioinformatics.oxfordjournals.org/content/30/12/i319.long|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 8|000|2023-07-04|sci-biology/jellyfish|jellyfish-1.1.12.ebuild|https://genome.umd.edu/jellyfish.html|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 8|000|2023-07-04|sci-biology/jellyfish|jellyfish-2.3.0.ebuild|https://genome.umd.edu/jellyfish.html|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|403|2023-07-04|sci-biology/KaKs_Calculator|KaKs_Calculator-2.0.ebuild|https://www.sciencedirect.com/science/article/pii/S1672022910600083|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|403|2023-07-04|sci-biology/karect|karect-1.0.ebuild|http://bioinformatics.oxfordjournals.org/content/31/21/3421.abstract|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 8|403|2023-07-04|sci-biology/MaSuRCA|MaSuRCA-4.0.1.ebuild|http://bioinformatics.oxfordjournals.org/content/29/21/2669|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 8|403|2023-07-04|sci-biology/MaSuRCA|MaSuRCA-4.1.0.ebuild|http://bioinformatics.oxfordjournals.org/content/29/21/2669|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|403|2023-07-04|sci-biology/megahit|megahit-1.2.9.ebuild|http://bioinformatics.oxfordjournals.org/content/31/10/1674.abstract|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|404|2023-07-04|sci-biology/MochiView|MochiView-1.46.ebuild|https://www.johnsonlab.ucsf.edu/mochi.html|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|308|2023-07-04|sci-biology/msautil|msautil-1.1-r1.ebuild|http://bioresearch.byu.edu/msa|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|000|2023-07-04|sci-biology/pairagon|pairagon-1.1.ebuild|https://mblab.wustl.edu/software.html|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|000|2023-07-04|sci-biology/ParaAT|ParaAT-1.0.ebuild|http://cbb.big.ac.cn/software|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|403|2023-07-04|sci-biology/ParaAT|ParaAT-1.0.ebuild|https://www.sciencedirect.com/science/article/pii/S0006291X12003518|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 8|000|2024-01-23|sci-biology/SPAdes|SPAdes-3.15.5.ebuild|https://cab.spbu.ru/software/spades|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|000|2023-07-04|sci-biology/stringtie|stringtie-2.1.5.ebuild|https://ccb.jhu.edu/software/stringtie|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|404|2023-07-04|sci-biology/tagdust|tagdust-20101028.ebuild|http://genome.gsc.riken.jp/osc/english/dataresource|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|000|2023-07-04|sci-biology/twinscan|twinscan-4.1.2-r1.ebuild|https://mblab.wustl.edu/software.html|sci-biology@gentoo.org 7|000|2023-07-04|sci-biology/vague-bin|vague-bin-1.0.5.ebuild|https://vicbioinformatics.com/software.vague.shtml|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|000|2024-05-23|sci-biology/VelvetOptimiser|VelvetOptimiser-2.2.6.ebuild|https://vicbioinformatics.com/software.velvetoptimiser.shtml|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|303|2023-07-04|sci-biology/wgs_tools|wgs_tools-9999.ebuild|https://www.ncbi.nlm.nih.gov/genbank/wgs|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org <<< ebuild_homepage_redirections >>> 8|200|2023-07-04|dev-python/py2bit|py2bit-0.3.0.ebuild|https://github.com/dpryan79/py2bit|https://github.com/deeptools/py2bit|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 8|200|2023-07-04|dev-python/py2bit|py2bit-0.3.1.ebuild|https://github.com/dpryan79/py2bit|https://github.com/deeptools/py2bit|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 8|200|2023-07-04|dev-python/py2bit|py2bit-9999.ebuild|https://github.com/dpryan79/py2bit|https://github.com/deeptools/py2bit|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 8|200|2024-07-20|dev-python/pybedtools|pybedtools-0.10.0.ebuild|https://daler.github.io/pybedtools|https://daler.github.io/pybedtools/|mschu.dev@gmail.com:sci-biology@gentoo.org 7|200|2023-07-04|sci-biology/align_to_scf|align_to_scf-1.06.ebuild|http://genome.imb-jena.de/software/roche454ace2caf|https://genome.leibniz-fli.de/software/roche454ace2caf/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|200|2023-07-04|sci-biology/ANGLE-bin|ANGLE-bin-20080813-r1.ebuild|http://bioinformatics.cenargen.embrapa.br/portrait/download|http://bioinformatics.cenargen.embrapa.br/portrait/download/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|200|2023-07-04|sci-biology/angsd|angsd-0.933.ebuild|http://www.popgen.dk/angsd|http://www.popgen.dk/angsd/index.php/Main_Page|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 8|200|2023-07-04|sci-biology/bambus|bambus-2.33-r2.ebuild|https://sourceforge.net/apps/mediawiki/amos/index.php?title=AMOS|https://sourceforge.net/projects/amos/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|200|2023-07-04|sci-biology/BRAKER|BRAKER-2.1.2.ebuild|http://bioinf.uni-greifswald.de/augustus/downloads|http://bioinf.uni-greifswald.de/augustus/downloads/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|200|2023-07-04|sci-biology/BRAKER|BRAKER-2.1.2.ebuild|http://bioinf.uni-greifswald.de/bioinf/braker|http://bioinf.uni-greifswald.de/bioinf/braker/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|200|2023-07-04|sci-biology/cast-bin|cast-bin-20080813.ebuild|http://bioinformatics.cenargen.embrapa.br/portrait/download|http://bioinformatics.cenargen.embrapa.br/portrait/download/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|200|2023-07-04|sci-biology/CAT|CAT-1.3.ebuild|https://bigd.big.ac.cn/tools/cat|https://ngdc.cncb.ac.cn/tools/cat|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|200|2024-01-01|sci-biology/cluster|cluster-1.59.ebuild|http://bonsai.hgc.jp/~mdehoon/software/cluster|http://bonsai.hgc.jp/~mdehoon/software/cluster/|je_fro@gentoo.org:sci-biology@gentoo.org 7|200|2023-07-04|sci-biology/coral|coral-1.4.1.ebuild|https://www.cs.helsinki.fi/u/lmsalmel/coral|https://www.cs.helsinki.fi/u/lmsalmel/coral/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|200|2023-07-04|sci-biology/diamond|diamond-2.0.6.ebuild|http://ab.inf.uni-tuebingen.de/software/diamond|https://uni-tuebingen.de/fakultaeten/mathematisch-naturwissenschaftliche-fakultaet/fachbereiche/informatik/lehrstuehle/algorithms-in-bioinformatics/software/diamond|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|200|2023-07-04|sci-biology/erpin|erpin-5.5b.ebuild|http://rna.igmors.u-psud.fr|http://rssf.i2bc.paris-saclay.fr/|sci-biology@gentoo.org 7|200|2023-07-04|sci-biology/freebayes|freebayes-1.3.5.ebuild|https://github.com/ekg/freebayes|https://github.com/freebayes/freebayes|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|200|2023-07-04|sci-biology/germline|germline-1.5.3.ebuild|http://genome.cshlp.org/content/19/2/318.full|https://genome.cshlp.org/content/19/2/318.full|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|200|2023-07-04|sci-biology/hexamer|hexamer-19990330.ebuild|http://www.sanger.ac.uk/resources/software|https://www.sanger.ac.uk/science/tools/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 8|200|2023-07-04|sci-biology/hisat2|hisat2-2.2.1.ebuild|https://daehwankimlab.github.io/hisat2|https://daehwankimlab.github.io/hisat2/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|200|2023-07-04|sci-biology/IMAGE|IMAGE-2.4.1.ebuild|https://sourceforge.net/apps/mediawiki/image2|https://sourceforge.net/projects/image2/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|200|2023-07-04|sci-biology/KaKs_Calculator|KaKs_Calculator-1.2.ebuild|https://bigd.big.ac.cn/tools/kaks|https://ngdc.cncb.ac.cn/tools/kaks|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|200|2023-07-04|sci-biology/mip-scaffolder|mip-scaffolder-0.6.ebuild|http://www.cs.helsinki.fi/u/lmsalmel/mip-scaffolder|https://www.cs.helsinki.fi/u/lmsalmel/mip-scaffolder/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|200|2024-05-08|sci-biology/mrfast|mrfast-2.6.0.1.ebuild|http://mrfast.sourceforge.net/|https://mrfast.sourceforge.net/|sci-biology@gentoo.org 8|200|2023-07-04|sci-biology/MuSeqBox|MuSeqBox-5.7.2021.ebuild|http://brendelgroup.org/bioinformatics2go/MuSeqBox.php|https://brendelgroup.org/bioinformatics2go/MuSeqBox.php|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|200|2023-07-04|sci-biology/nextclip|nextclip-1.3.1.ebuild|https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3928519|https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3928519/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|200|2023-07-04|sci-biology/perga|perga-9999.ebuild|http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4252104|https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4252104/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|200|2024-05-08|sci-biology/perlprimer|perlprimer-1.1.21.ebuild|http://perlprimer.sourceforge.net/|https://perlprimer.sourceforge.net/|sci-biology@gentoo.org 7|404|2023-07-04|sci-biology/pileup|pileup-0.6.ebuild|https://www.sanger.ac.uk/resources/software/ssaha2/|https://www.sanger.ac.uk/science/search-tools-and-software|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|200|2023-07-04|sci-biology/portrait|portrait-1.1.ebuild|http://bioinformatics.cenargen.embrapa.br/portrait|http://bioinformatics.cenargen.embrapa.br/portrait/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|200|2023-07-04|sci-biology/prinseq-lite|prinseq-lite-0.20.4.ebuild|http://prinseq.sourceforge.net/|https://prinseq.sourceforge.net/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|200|2023-07-04|sci-biology/samstat|samstat-1.5.1.ebuild|http://samstat.sourceforge.net|https://sourceforge.net/directory/bio-informatics/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|200|2023-07-04|sci-biology/seqtools|seqtools-4.44.1.ebuild|http://www.sanger.ac.uk/resources/software/seqtools|https://www.sanger.ac.uk/tool/seqtools/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|200|2023-07-04|sci-biology/sff_dump|sff_dump-1.04.ebuild|http://genome.imb-jena.de/software/roche454ace2caf|https://genome.leibniz-fli.de/software/roche454ace2caf/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 8|200|2023-07-04|sci-biology/stacks|stacks-2.60.ebuild|http://creskolab.uoregon.edu/stacks|http://catchenlab.life.illinois.edu/stacks/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 8|404|2023-07-04|sci-biology/subread|subread-2.0.3.ebuild|http://bioinf.wehi.edu.au/featureCounts/|https://bioinf.wehi.edu.au/featureCounts/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|200|2023-07-04|sci-biology/swissknife|swissknife-1.80.ebuild|http://swissknife.sourceforge.net/|https://swissknife.sourceforge.net/|sci-biology@gentoo.org 7|200|2023-07-04|sci-biology/tabixpp|tabixpp-1.1.0.ebuild|https://github.com/ekg/tabixpp|https://github.com/vcflib/tabixpp|sci-biology@gentoo.org 7|200|2023-07-04|sci-biology/trf-bin|trf-bin-4.09.ebuild|http://tandem.bu.edu/trf/trf.html|https://tandem.bu.edu/trf/trf.html|sci-biology@gentoo.org <<< ebuild_leading_trailing_whitespaces_in_variables >>> 8|sci-biology/ncbi-vdb|ncbi-vdb-2.11.2.ebuild|DESCRIPTION|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 8|sci-biology/ngs|ngs-2.11.2.ebuild|DESCRIPTION|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/tabixpp|tabixpp-1.1.0.ebuild|DESCRIPTION|sci-biology@gentoo.org <<< ebuild_missing_zip_dependency >>> 7|sci-biology/graf-bin|graf-bin-2.4.ebuild|https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/GetZip.cgi?zip_name=GRAF_files.zip|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org <<< ebuild_multiple_deps_per_line >>> 8|sci-biology/deeptools|deeptools-3.5.0.ebuild|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 8|sci-biology/deeptools|deeptools-3.5.1.ebuild|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/fsl|fsl-6.0.4.ebuild|sci-biology@gentoo.org 8|sci-biology/fsl|fsl-6.0.5.ebuild|sci-biology@gentoo.org 7|sci-biology/megahit|megahit-1.2.9.ebuild|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org <<< ebuild_src_uri_bad >>> 8|2023-07-04|dev-python/pyBigWig|pyBigWig-0.3.17.ebuild|https://github.com/dpryan79/pyBigWig/archive/0.3.17.tar.gz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 8|2023-07-04|dev-python/pyBigWig|pyBigWig-0.3.18.ebuild|https://github.com/dpryan79/pyBigWig/archive/0.3.18.tar.gz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|2024-05-08|sci-biology/codonw|codonw-1.4.4-r2.ebuild|https://downloads.sourceforge.net/codonw/CodonWSourceCode_1_4_4.tar.gz|sci-biology@gentoo.org 7|2024-03-01|sci-biology/fsl|fsl-6.0.4.ebuild|https://fsl.fmrib.ox.ac.uk/fsldownloads/fsl-6.0.4-sources.tar.gz|sci-biology@gentoo.org 8|2024-03-01|sci-biology/fsl|fsl-6.0.5.ebuild|https://fsl.fmrib.ox.ac.uk/fsldownloads/fsl-6.0.5-sources.tar.gz|sci-biology@gentoo.org 7|2024-05-08|sci-biology/mrfast|mrfast-2.6.0.1.ebuild|https://downloads.sourceforge.net/mrfast/mrfast-2.6.0.1.tar.gz|sci-biology@gentoo.org 7|2023-07-04|sci-biology/NGSEPcore-bin|NGSEPcore-bin-4.0.3.ebuild|https://sourceforge.net/projects/ngsep/files/Library/NGSEPcore_4.0.3.jar|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|2023-07-04|sci-biology/stringtie|stringtie-2.1.5.ebuild|https://github.com/gpertea/stringtie/releases/download/v2.1.5/stringtie-2.1.5.tar.gz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|2023-07-04|sci-biology/tagdust|tagdust-20101028.ebuild|http://genome.gsc.riken.jp/osc/english/software/src/tagdust.tgz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|2023-07-04|sci-biology/vague-bin|vague-bin-1.0.5.ebuild|https://vicbioinformatics.com/vague-1.0.5.tar.gz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org <<< ebuild_unused_eclasses >>> 7|sci-biology/megahit|megahit-1.2.9.ebuild|toolchain-funcs|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org <<< ebuild_variable_missing_braces >>> 7|sci-biology/AlignGraph|AlignGraph-9999.ebuild|PV|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/BRANCH|BRANCH-9999.ebuild|PV|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/epga|epga-9999.ebuild|PV|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/lighter|lighter-1.1.2.ebuild|PV|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/lighter|lighter-9999.ebuild|PV|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/sabre|sabre-9999.ebuild|PV|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/sickle|sickle-1.33.ebuild|PV|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/sickle|sickle-9999.ebuild|PV|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/snpomatic|snpomatic-1.0.ebuild|PV|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/vague-bin|vague-bin-1.0.5.ebuild|PV|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org <<< packages_pkgcheck_scan >>> dev-perl/Algorithm-Loops|RedirectedUrl|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org dev-perl/Bio-BigFile|RedirectedUrl|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org dev-perl/Bio-DB-Das-Chado|DeadUrl:RedirectedUrl|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org dev-perl/BTLib|DeadUrl:HttpsUrlAvailable:RedirectedUrl|sci-biology@gentoo.org dev-perl/Config-Std|RedirectedUrl|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org dev-perl/DBIx-DBStag|RedirectedUrl|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org dev-perl/go-db-perl|RedirectedUrl|sci-biology@gentoo.org dev-perl/Log-Cabin|RedirectedUrl|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org dev-perl/Scalar-Util-Numeric|RedirectedUrl|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org dev-perl/Set-IntSpan-Fast|RedirectedUrl|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org dev-perl/Text-Graph|RedirectedUrl|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 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