<<< BAS-IMP-ebuild_multiple_deps_per_line >>> sci-biology/cegma|cegma-2.5.ebuild|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/genometools|genometools-1.5.10.ebuild|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/maker|maker-2.31.10.ebuild|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/maker|maker-3.01.02_beta.ebuild|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/megahit|megahit-9999.ebuild|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/ncbi-blast+|ncbi-blast+-2.2.30.ebuild|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/ncbi-blast+|ncbi-blast+-2.2.31.ebuild|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/ncbi-blast+|ncbi-blast+-2.6.0.ebuild|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/ncbi-blast+|ncbi-blast+-2.8.1.ebuild|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/phusion|phusion-2.1c.ebuild|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/prokka|prokka-1.11.ebuild|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-libs/tensorflow|tensorflow-1.5.0.ebuild|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-libs/tensorflow|tensorflow-1.7.0.ebuild|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-libs/tensorflow|tensorflow-1.8.0.ebuild|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org <<< DEL-BUG-ebuild_deprecated_eclasses >>> 5|sci-biology/amos|amos-9999.ebuild|autotools-utils|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/deeptools|deeptools-2.5.0.ebuild|git-2|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/deeptools|deeptools-9999.ebuild|git-2|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/exonerate-gff3|exonerate-gff3-9999.ebuild|autotools-utils|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/germline|germline-1.5.1.ebuild|versionator|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/germline|germline-1.5.2.ebuild|versionator|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/imagej|imagej-1.51k.ebuild|versionator|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/OBO-Edit|OBO-Edit-2.1.0.ebuild|versionator|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/OBO-Edit|OBO-Edit-2.1.1.6.ebuild|versionator|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/plinkseq|plinkseq-0.10.ebuild|autotools-utils|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/staden|staden-2.0.0_beta10.ebuild|autotools-utils|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/staden|staden-2.0.0_beta11.ebuild|autotools-utils|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/staden|staden-9999.ebuild|autotools-utils|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/wcd|wcd-0.6.3.ebuild|autotools-utils|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-libs/tensorflow|tensorflow-1.8.0.ebuild|versionator|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org <<< ECU-BUG-ebuild_missing_eclasses >>> 6|dev-lua/lua-md5|lua-md5-1.2.ebuild|epatch|mmokrejs@fold.natur.cuni.cz 6|sci-biology/abacas|abacas-1.3.1.ebuild|optfeature|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/bedops|bedops-2.4.26.ebuild|epatch|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/flexbar|flexbar-2.7.0.ebuild|flag-o-matic|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/flexbar|flexbar-3.0.0.ebuild|flag-o-matic|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/imagej|imagej-1.51k.ebuild|epatch:desktop|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/ncbi-blast+|ncbi-blast+-2.2.30.ebuild|epatch|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/ncbi-blast+|ncbi-blast+-2.2.31.ebuild|epatch|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/ncbi-blast+|ncbi-blast+-2.6.0.ebuild|epatch|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/ncbi-blast+|ncbi-blast+-2.8.1.ebuild|epatch|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/Rcorrector|Rcorrector-9999.ebuild|epatch|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/reapr|reapr-1.0.18.ebuild|epatch|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/SOAPdenovo2|SOAPdenovo2-241.ebuild|epatch|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/tablet-bin|tablet-bin-1.17.08.17.ebuild|versionator|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/tigr-foundation-libs|tigr-foundation-libs-2.0-r1.ebuild|epatch|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-libs/lib2bit|lib2bit-0.2.1.ebuild|epatch|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-libs/tensorflow|tensorflow-1.8.0.ebuild|flag-o-matic|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org <<< ECU-BUG-ebuild_unused_eclasses >>> 6|dev-lua/lua-md5|lua-md5-1.2.ebuild|eutils|mmokrejs@fold.natur.cuni.cz 6|sci-biology/abacas|abacas-1.3.1.ebuild|eutils|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/bamql|bamql-1.6.1.ebuild|eutils|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/bedops|bedops-2.4.26.ebuild|eutils|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/chiron|chiron-9999.ebuild|eutils|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/freebayes|freebayes-9999.ebuild|eutils|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/imagej|imagej-1.51k.ebuild|eutils|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/jellyfish|jellyfish-1.1.12.ebuild|eutils:flag-o-matic|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/jellyfish|jellyfish-2.1.3-r1.ebuild|eutils:flag-o-matic|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/jellyfish|jellyfish-2.1.4-r1.ebuild|eutils:flag-o-matic|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/jellyfish|jellyfish-2.2.10.ebuild|eutils:flag-o-matic|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/jellyfish|jellyfish-2.3.0.ebuild|eutils:flag-o-matic|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/KaKs_Calculator|KaKs_Calculator-1.2.ebuild|eutils|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/KaKs_Calculator|KaKs_Calculator-2.0.ebuild|eutils|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/kat|kat-2.4.2.ebuild|flag-o-matic|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/kat|kat-9999.ebuild|flag-o-matic|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/KING|KING-20161017.ebuild|eutils|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/megahit|megahit-9999.ebuild|eutils|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/ncbi-blast+|ncbi-blast+-2.2.30.ebuild|eutils|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/ncbi-blast+|ncbi-blast+-2.2.31.ebuild|eutils|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/ncbi-blast+|ncbi-blast+-2.6.0.ebuild|eutils|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/ncbi-blast+|ncbi-blast+-2.8.1.ebuild|eutils|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/nextclip|nextclip-1.3.1.ebuild|flag-o-matic|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/ntCard|ntCard-1.1.0.ebuild|eutils|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/ntCard|ntCard-9999.ebuild|eutils|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/nxtrim|nxtrim-9999.ebuild|eutils|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/Rcorrector|Rcorrector-9999.ebuild|eutils|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/reapr|reapr-1.0.18.ebuild|eutils|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/rtg-tools|rtg-tools-9999.ebuild|eutils|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/samstat|samstat-1.5.1.ebuild|eutils|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/SEECER|SEECER-0.1.3-r2.ebuild|eutils|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/seq_crumbs|seq_crumbs-0.1.9.ebuild|eutils|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/SOAPdenovo2|SOAPdenovo2-241.ebuild|eutils|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/SPAdes|SPAdes-3.13.0.ebuild|eutils|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/tigr-foundation-libs|tigr-foundation-libs-2.0-r1.ebuild|eutils|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-libs/lib2bit|lib2bit-0.2.1.ebuild|eutils|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-libs/tensorflow|tensorflow-1.0.1.ebuild|eutils|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-libs/tensorflow|tensorflow-1.5.0.ebuild|eutils|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-libs/tensorflow|tensorflow-1.7.0.ebuild|eutils|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-libs/tensorflow|tensorflow-1.8.0.ebuild|eutils|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org <<< PAC-BUG-ebuild_unused_patches_simple >>> sci-biology/quorum|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/tablet|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org <<< PAT-BUG-ebuild_unused_patches >>> sci-biology/caftools|Makefile.in.patch|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/quorum|quorum-0.2.1-use-jellyfish1.patch|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/SOAPdenovo2|soapdenovo2.1|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/tablet|response.varfile|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org <<< RMC-IMP-packages_full_repoman >>> dev-lang/yaggo|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org dev-perl/Algorithm-Loops|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org dev-perl/Bio-BigFile|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org dev-perl/Bio-DB-Das-Chado|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org dev-perl/Bio-DB-HTS|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org dev-perl/DBIx-DBStag|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org dev-perl/Config-Std|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org dev-perl/Data-Types|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org dev-perl/Log-Cabin|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org dev-perl/Scalar-Util-Numeric|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org dev-perl/Set-IntSpan-Fast|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org dev-perl/Text-Graph|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org dev-perl/Text-ParseWords|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org dev-perl/Text-RecordParser|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org dev-perl/Time-Progress|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org dev-perl/go-perl|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org dev-python/GOGrapher|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org dev-python/absl-py|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci@gentoo.org dev-python/bcbio-gff|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org dev-python/ngslib|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org dev-python/psubprocess|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org dev-python/py2bit|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org dev-python/pyBigWig|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org dev-python/pyvcf|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org dev-python/shove|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org dev-python/xopen|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org dev-util/makefile2graph|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/AlignGraph|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/Atlas-Link|KEYWORDS.missing:repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/Atlas|KEYWORDS.missing:repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/ANGLE-bin|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/Atlas2|KEYWORDS.missing:repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/Atlas_GapFill|KEYWORDS.missing:repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/BRANCH|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/BamView|KEYWORDS.missing:repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/DisEMBL|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/BBmap|repo.eapi-deprecated:uri.https|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/EBARDenovo|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/BlastToSam|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/ESTate|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/FLASH|repo.eapi-deprecated:uri.https|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/GAL|KEYWORDS.missing:repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/IMAGE|KEYWORDS.missing:repo.eapi-deprecated:uri.https|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/ICC|KEYWORDS.missing:repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/MaSuRCA|KEYWORDS.missing:repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/InterMine|repo.eapi-deprecated:uri.https|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/MagicViewer|KEYWORDS.missing:repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/MeV|KEYWORDS.missing:repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/MochiView|KEYWORDS.missing:repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/KING|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/MuSeqBox|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/ORFcor|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/OBO-Edit|inherit.deprecated:repo.eapi-deprecated:upstream.workaround:uri.https|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/RADtools|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/Rcorrector|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/RSeQC|repo.eapi-deprecated:uri.https|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/Ray|repo.eapi-deprecated:uri.https|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/SOAPdenovo2|KEYWORDS.missing:repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/STAR|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/SPAdes|KEYWORDS.missing:repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/SEECER|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/Scaffolder-evaluation|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/Sibelia|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/SSAKE|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/StarORF|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/Trinotate|KEYWORDS.missing:repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/SolexaQA|repo.eapi-deprecated:uri.https|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/TransDecoder|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/SnpEff|repo.eapi-deprecated:uri.https|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/VelvetOptimiser|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/abacas|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/YASRA|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/act-bin|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/ampliconnoise|KEYWORDS.missing:dependency.badmasked:repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/align_to_scf|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/angsd|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/apollo|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/arachne|KEYWORDS.missing:repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/argo-bin|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/artemis|dependency.badmasked:repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/assembly-stats|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/argo|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/amos|repo.eapi-deprecated:uri.https|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/autoeditor|repo.eapi-deprecated:uri.https|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/bam-readcount|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/bambino|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/barnacle|KEYWORDS.missing:repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/beagle|KEYWORDS.missing:repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/barrnap|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/beaglecall|KEYWORDS.missing:repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/bfast|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/bambus|repo.eapi-deprecated:uri.https|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/bedops|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 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sci-biology/genomeview-bin|KEYWORDS.missing:repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/gfftools|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/germline|inherit.deprecated:repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/grabix|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/graf-bin|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/glean|repo.eapi-deprecated:uri.https|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/grass|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/hexamer|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/hts-python|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/hisat2|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 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sci-biology/khmer|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/kmergenie|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/lastz|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/lighter|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/lumpy-sv|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/lucy|repo.eapi-deprecated:uri.https|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/libBigWig|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/mRNAmarkup|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/kat|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/manatee-jcvi|KEYWORDS.missing:repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 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sci-biology/nrcl|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/nxtrim|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/nwalign|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/oases|KEYWORDS.missing:repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/parafly|repo.eapi-deprecated:uri.https|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/pairagon|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/pb-honey|KEYWORDS.missing:repo.eapi-deprecated:uri.https|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/pb-jelly|KEYWORDS.missing:dependency.badmasked:repo.eapi-deprecated:uri.https|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/perga|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/phusion|KEYWORDS.missing:repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/phusion2|KEYWORDS.missing:repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/pileup|KEYWORDS.missing:repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/oncotator|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/plinkseq|KEYWORDS.missing:repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/polyphen|KEYWORDS.missing:repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/primerD|KEYWORDS.missing:repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/prinseq-lite|KEYWORDS.missing:repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/proovread|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/prokka|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/prot4EST|KEYWORDS.missing:repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/psx|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/pvmsx|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/poretools|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/pysamstats|KEYWORDS.missing:repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/quast|KEYWORDS.missing:repo.eapi-deprecated:uri.https|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/quorum|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/reaper|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/reapr|KEYWORDS.missing:dependency.badmasked:repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/reptile|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/roche454ace2caf|KEYWORDS.missing:repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/rtg-tools|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/sabre|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/sambamba|KEYWORDS.missing:repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/samstat|repo.eapi-deprecated:uri.https|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/scaffold_builder|repo.eapi-deprecated:uri.https|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/rum|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/scan_for_matches|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/ruffus|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/scbi_blast|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/scbi_fasta|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/scbi_fastq|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/scbi_mapreduce|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/scbi_plot|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/scbi_zcat|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/sclust|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/seq_crumbs|KEYWORDS.missing:repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/scythe|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/sga|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/seqclean|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/sff_dump|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/sickle|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/sgp2|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/seqtools|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/skewer-bin|repo.eapi-deprecated:uri.https|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/smalt-bin|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/snphylo|KEYWORDS.missing:repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/smalt|repo.eapi-deprecated:uri.https|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/snpomatic|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/snap|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/somatic-sniper|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/ssaha2-bin|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/stacks|KEYWORDS.missing:repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/staden|KEYWORDS.missing:repo.eapi-deprecated:uri.https|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/staden_doc|KEYWORDS.missing:repo.eapi-deprecated:upstream.workaround:uri.https|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/sra_sdk|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/stampy-bin|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/stringtie|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/subread|repo.eapi-deprecated:uri.https|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/tagdust|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/tclust|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/tigmint|KEYWORDS.missing:repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/tigr-foundation-libs|repo.eapi-deprecated:uri.https|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/trans-abyss|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/trim_galore|KEYWORDS.missing:repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/trinityrnaseq|KEYWORDS.missing:repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/trowel|repo.eapi-deprecated:uri.https|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/vcflib|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/trimmomatic|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/vt|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/verifyBamID|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/wcd|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/wgs_tools|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/weblogo|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/yaha|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/gffcompare|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-libs/bloom|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-libs/fast5|KEYWORDS.missing:repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-libs/jhdf5|KEYWORDS.missing:repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-libs/lib2bit|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-libs/libStatGen|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-libs/tensorflow|KEYWORDS.missing:inherit.deprecated:repo.eapi-deprecated:upstream.workaround|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org dev-lua/lua-md5|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz sci-biology/Fastaq|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/pilon-bin|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/ntCard|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/pbbam|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/canu|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/ParaAT|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/MolBioLib|KEYWORDS.missing|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/tablet-bin|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/NGSEPcore|KEYWORDS.missing|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/NGSEPplugin|KEYWORDS.missing:dependency.badmasked|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/tablet|KEYWORDS.missing|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/vague-bin|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/maker|KEYWORDS.missing:repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/portrait|KEYWORDS.missing:repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org dev-perl/Bio-EnsEMBL|KEYWORDS.missing:repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/jellyfish|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org sci-biology/BRAKER|repo.eapi-deprecated|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org <<< SIC-BUG-ebuild_epatch_in_eapi6 >>> 6|dev-lua/lua-md5|lua-md5-1.2.ebuild|mmokrejs@fold.natur.cuni.cz 6|sci-biology/bedops|bedops-2.4.26.ebuild|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/imagej|imagej-1.51k.ebuild|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/Rcorrector|Rcorrector-9999.ebuild|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/reapr|reapr-1.0.18.ebuild|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/SOAPdenovo2|SOAPdenovo2-241.ebuild|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/tigr-foundation-libs|tigr-foundation-libs-2.0-r1.ebuild|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-libs/lib2bit|lib2bit-0.2.1.ebuild|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org <<< SIC-BUG-ebuild_variables_in_homepages >>> 5|sci-biology/estscan|estscan-3.0.3.ebuild|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org <<< SIC-IMP-ebuild_insecure_git_uri_usage >>> 5|sci-biology/amos|amos-9999.ebuild|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org <<< SIC-IMP-ebuild_trailing_whitespaces >>> 5|sci-biology/maker|maker-2.31.10.ebuild|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/seq_crumbs|seq_crumbs-0.1.9.ebuild|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org <<< SRT-BUG-ebuild_missing_zip_dependency >>> 6|sci-biology/Atlas2|Atlas2-1.4.3|http://downloads.sourceforge.net/project/atlas2/Atlas2_v1.4.3.zip|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/beagle|beagle-4.0|http://faculty.washington.edu/browning/beagle/beagle.r1399.src.zip|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/beaglecall|beaglecall-20101115|http://faculty.washington.edu/browning/beaglecall/beaglecall_1.0.1_15Nov10.src.zip|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/beaglecall|beaglecall-20101115|http://faculty.washington.edu/browning/beaglecall/beaglecall_example.zip|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/cgview-bin|cgview-bin-20131130|http://www.ualberta.ca/~stothard/downloads/cgview_comparison_tool.zip|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/conform-gt|conform-gt-1174|http://faculty.washington.edu/browning/conform-gt/conform-gt.r1174.zip|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/conrad|conrad-1|http://www.broadinstitute.org/annotation/conrad/conradSrcV1.zip|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/EBARDenovo|EBARDenovo-1.2.2|http://downloads.sourceforge.net/project/ebardenovo/EBARDenovo-1.2.2-20130404.zip|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/ensembl-tools|ensembl-tools-86|https://github.com/Ensembl/ensembl-tools/archive/release/86.zip|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/fastqc|fastqc-0.11.3|http://www.bioinformatics.babraham.ac.uk/projects/fastqc/fastqc_v0.11.3_source.zip|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/genomeview-bin|genomeview-bin-2450|http://downloads.sourceforge.net/project/genomeview/GenomeView/genomeview-2450.zip|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/graf-bin|graf-bin-20171212|http://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/GetZip.cgi?zip_name=GRAF_files.zip|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/ICC|ICC-2.0.1|http://indra.mullins.microbiol.washington.edu/cgi-bin/ICC/info.cgi?ID=ICC_v2.0.1.zip|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/IMAGE|IMAGE-2.4.1|http://sourceforge.net/projects/image2/files/IMAGE_version2.4.1_64bit.zip|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/imagej|imagej-1.51k|http://imagej.nih.gov/ij/download/src/ij151k-src.zip|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/imagej|imagej-1.51k|http://wsr.imagej.net/distros/cross-platform/ij150.zip|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/reptile|reptile-1.1|http://aluru-sun.ece.iastate.edu/lib/exe/fetch.php?media=source:reptile-v1.1.zip|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/scaffold_builder|scaffold_builder-20131122-r1|http://sourceforge.net/projects/scaffold-b/files/scaffold_builder_v2.1.zip|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/SnpEff|SnpEff-4.3i|http://sourceforge.net/projects/snpeff/files/snpEff_v4_3i_core.zip|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/SolexaQA|SolexaQA-2.2|http://sourceforge.net/projects/solexaqa/files/src/SolexaQA_v.2.2.zip|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/trim_galore|trim_galore-0.4.0|http://www.bioinformatics.babraham.ac.uk/projects/trim_galore/trim_galore_v0.4.0.zip|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/trimmomatic|trimmomatic-0.38|http://www.usadellab.org/cms/uploads/supplementary/Trimmomatic/Trimmomatic-Src-0.38.zip|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-libs/jhdf5|jhdf5-14.12.1|https://wiki-bsse.ethz.ch/download/attachments/26609237/sis-jhdf5-14.12.1-r33502.zip|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org <<< SRT-BUG-ebuild_src_uri_check >>> 5|dev-python/psubprocess|psubprocess-0.1.2|http://bioinf.comav.upv.es/_downloads/psubprocess-0.1.2.tar.gz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/ampliconnoise|ampliconnoise-1.27|http://ampliconnoise.googlecode.com/files/AmpliconNoiseV1.27.tar.gz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/ampliconnoise|ampliconnoise-1.27|http://ampliconnoise.googlecode.com/files/DiversityEstimates.tar.gz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/ampliconnoise|ampliconnoise-1.27|http://ampliconnoise.googlecode.com/files/TutorialV1.22.tar.gz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/argo|argo-1.0.24|http://www.broadinstitute.org/annotation/argo/src/workspace-2008-03-11.tgz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/argo-bin|argo-bin-1.0.31|http://www.broadinstitute.org/annotation/argo/argo.jar|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/argo-bin|argo-bin-2.0.3|http://www.broadinstitute.org/annotation/argo2/releases/argo2.jar|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/bambino|bambino-1.02|https://cgwb.nci.nih.gov/cgi-bin/bambino?download_bambino_jar=bundle|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/bambino|bambino-1.02|https://cgwb.nci.nih.gov/cgi-bin/bambino?download_bambino_jar=core|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/bambino|bambino-1.06|https://cgwb.nci.nih.gov/cgi-bin/bambino?download_bambino_jar=bundle|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/bambino|bambino-1.06|https://cgwb.nci.nih.gov/cgi-bin/bambino?download_bambino_jar=core|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/bambus|bambus-2.33|http://sourceforge.net/projects/amos/files/bambus/2.33/bambus-2.33.tar.gz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/BBmap|BBmap-35.92|http://sourceforge.net/projects/bbmap/files/BBMap_35.92.tar.gz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/BBmap|BBmap-36.02|http://sourceforge.net/projects/bbmap/files/BBMap_36.02.tar.gz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/BBmap|BBmap-36.86|http://sourceforge.net/projects/bbmap/files/BBMap_36.86.tar.gz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/bfast|bfast-0.7.0_alpha|https://sourceforge.net/projects/bfast/files/bfast/0.7.0/bfast-0.7.0a.tar.gz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org|625490 5|sci-biology/blue|blue-1.1.2|http://www.bioinformatics.csiro.au/public/files/Changes_for_Blue_1.1.3.pdf|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/blue|blue-1.1.2|http://www.bioinformatics.csiro.au/public/files/Correcting_reads_with_Blue.pdf|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/blue|blue-1.1.2|http://www.bioinformatics.csiro.au/public/files/Linux-1.1.2.tar.gz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/blue|blue-1.1.3|http://www.bioinformatics.csiro.au/public/files/Changes_for_Blue_1.1.3.pdf|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/blue|blue-1.1.3|http://www.bioinformatics.csiro.au/public/files/Correcting_reads_with_Blue.pdf|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/blue|blue-1.1.3|http://www.bioinformatics.csiro.au/public/files/Linux-1.1.3.tar.gz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/cd-hit-auxtools|cd-hit-auxtools-0.5|http://cdhit.googlecode.com/files/cd-hit-auxtools-v0.5-2012-03-07.tgz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/cd-hit-auxtools|cd-hit-auxtools-0.5|http://weizhong-lab.ucsd.edu/cd-hit/wiki/doku.php?id=cd-hit-auxtools-manual|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/cgview-bin|cgview-bin-20131130|http://www.ualberta.ca/~stothard/downloads/cgview_comparison_tool.zip|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/clview|clview-0.1|http://sourceforge.net/projects/clview/files/source%20code/clview_src.tar.gz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/conrad|conrad-1|http://www.broadinstitute.org/annotation/conrad/conradSrcV1.zip|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/cortex_var|cortex_var-1.0.5.21|http://sourceforge.net/projects/cortexassembler/files/cortex_var/latest/CORTEX_release_v1.0.5.21.tgz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/cross_genome|cross_genome-20140822|https://sourceforge.net/projects/phusion2/files/cross_genome/cross_genome.tar.gz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/est2assembly|est2assembly-1.08|http://est2assembly.googlecode.com/files/est2assembly_1.08.tar.gz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/ESTate|ESTate-0.5|http://www.ebi.ac.uk/~guy/estate/estate.tar.gz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/ESTate|ESTate-0.5|http://www.ebi.ac.uk/~guy/estate/thesis.ps.gz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/eugene|eugene-4.1d|https://mulcyber.toulouse.inra.fr/frs/download.php/1359/eugene-4.1d.tar.gz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org|741184 5|sci-biology/ffindex|ffindex-0.9.9.6|http://www.splashground.de/~andy/programs/FFindex/ffindex-0.9.9.6.tar.gz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/fgap-bin|fgap-bin-1.8.1|https://sourceforge.net/projects/fgap/files/FGAP_1_8_1_LINUX64b.tar.gz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/fgap|fgap-1.8.1|https://sourceforge.net/projects/fgap/files/fgap.m|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/germline|germline-1.5.2|http://www.cs.columbia.edu/~gusev/germline/germline-1-5-2.tar.gz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/jtreeview-bin|jtreeview-bin-1.1.6.4|http://sourceforge.net/projects/jtreeview/files/helper-scripts/0.0.2/helper-scripts-0.0.2.tar.gz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/jtreeview-bin|jtreeview-bin-1.1.6.4|http://sourceforge.net/projects/jtreeview/files/jtreeview/1.1.6r4/TreeView-1.1.6r4-bin.tar.gz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/jtreeview|jtreeview-1.1.6.4|http://sourceforge.net/projects/jtreeview/files/helper-scripts/0.0.2/helper-scripts-0.0.2.tar.gz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/jtreeview|jtreeview-1.1.6.4|http://sourceforge.net/projects/jtreeview/files/jtreeview/1.1.6r4/TreeView-1.1.6r4-src.tar.gz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/lucy|lucy-1.20|http://sourceforge.net/projects/lucy/files/lucy/lucy%201.20/lucy1.20.tar.gz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/MagicViewer|MagicViewer-1.2.1|http://59.79.168.90/soft/MagicViewer_1.2.1_x86_32_linux.tar.gz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/MagicViewer|MagicViewer-1.2.1|http://59.79.168.90/soft/MagicViewer_1.2.1_x86_64_linux.tar.gz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/manatee-igs|manatee-igs-2.23.1|http://sourceforge.net/projects/manatee/files/igs_manatee/2.23.1/manatee-2.23.1_linux.tgz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/mRNAmarkup|mRNAmarkup-1.0|http://www.brendelgroup.org/bioinformatics2go/Download/mRNAmarkup-10-3-2013.tar.gz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/MuSeqBox|MuSeqBox-5.4|http://www.brendelgroup.org/bioinformatics2go/Download/MuSeqBox-4-8-2015.tar.gz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/ngs_backbone|ngs_backbone-1.4.0|http://bioinf.comav.upv.es/_downloads/ngs_backbone-1.4.0.tar.gz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/NGSEPcore|NGSEPcore-3.3.1|https://sourceforge.net/projects/ngsep/files/SourceCode/NGSEPcore_3.3.1.tar.gz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/NGSEPcore|NGSEPcore-3.3.1|https://sourceforge.net/projects/ngsep/files/training/Tutorial.txt|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/NGSEPcore|NGSEPcore-3.3.1|https://sourceforge.net/projects/ngsep/files/training/UserManualNGSEP_V330.pdf|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/NGSEPplugin|NGSEPplugin-3.3.1|https://sourceforge.net/projects/ngsep/files/SourceCode/NGSEPplugin_3.3.1.tar.gz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/OBO-Edit|OBO-Edit-2.1.0|http://sourceforge.net/projects/geneontology/files/OBO-Edit%202%20%5BLatest%20versions%5D/OBO-Edit%202.1.0/2-1-0_unix_install4j.sh/download|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/OBO-Edit|OBO-Edit-2.1.0|http://sourceforge.net/projects/geneontology/files/OBO-Edit%202%20%5BLatest%20versions%5D/OBO-Edit%202.1.0/ReleaseNotes-2.1.0.txt|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/OBO-Edit|OBO-Edit-2.1.1.6|http://downloads.sourceforge.net/project/geneontology/OBO-Edit%202%20%5BLatest%20versions%5D/2.1.1-b6/2-1-1-6_unix_install4j.sh|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/OBO-Edit|OBO-Edit-2.1.1.6|http://sourceforge.net/projects/geneontology/files/OBO-Edit%202%20%5BLatest%20versions%5D/2-1-1-6/ReleaseNotes-2.1.1-b6.txt|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/ORFcor|ORFcor-20130507|http://www.currielab.wisc.edu/files/ORFcor.tar.gz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/parafly|parafly-20130121|http://sourceforge.net/projects/transdecoder/files/OLDER/TransDecoder_r20140704.tar.gz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/pb-honey|pb-honey-14.1.15|http://sourceforge.net/projects/pb-jelly/files/PBHoney/PBHoney_14.1.15.tgz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/pb-jelly|pb-jelly-14.9.9|http://sourceforge.net/projects/pb-jelly/files/PBSuite_14.9.9.tgz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/plinkseq|plinkseq-0.10|http://psychgen.u.hpc.mssm.edu/plinkseq_downloads/plinkseq-src-latest.tgz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/polyphen|polyphen-2.2.2|http://genetics.bwh.harvard.edu/pph2/dokuwiki/_media/polyphen-2.2.2r405b.tar.gz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/prinseq-lite|prinseq-lite-0.20.4|https://sourceforge.net/projects/prinseq/files/standalone/prinseq-lite-0.20.4.tar.gz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/quast|quast-4.4|http://sourceforge.net/projects/quast/files/quast-4.4.tar.gz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/RADtools|RADtools-1.2.4|https://www.wiki.ed.ac.uk/download/attachments/68630442/RADmanual.pdf|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/RADtools|RADtools-1.2.4|https://www.wiki.ed.ac.uk/download/attachments/68630442/RADtools_1.2.4.tar.gz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/Ray|Ray-2.3.0|http://sourceforge.net/projects/denovoassembler/files/Ray-2.3.0.tar.bz2|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/reptile|reptile-1.1|http://aluru-sun.ece.iastate.edu/lib/exe/fetch.php?media=source:reptile-v1.1.zip|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/RSeQC|RSeQC-2.6.1|http://sourceforge.net/projects/rseqc/files/other/fetchChromSizes|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/RSeQC|RSeQC-2.6.1|http://sourceforge.net/projects/rseqc/files/RSeQC-2.6.1.tar.gz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/samstat|samstat-1.5.1|http://sourceforge.net/projects/samstat/files/samstat-1.5.1.tar.gz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/scaffold_builder|scaffold_builder-20131122-r1|http://sourceforge.net/projects/scaffold-b/files/scaffold_builder_v2.1.zip|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/scaffold_builder|scaffold_builder-20131122-r1|http://sourceforge.net/projects/scaffold-b/files/scaffold_builder_v2_help.doc|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/skewer-bin|skewer-bin-0.1.104|http://sourceforge.net/projects/skewer/files/Binaries/skewer-0.1.104-linux-x86_64|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/skewer-bin|skewer-bin-0.1.104|http://sourceforge.net/projects/skewer/files/Scripts/srna-scripts-0.1.2.tar.gz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/smalt|smalt-0.7.6|http://sourceforge.net/projects/smalt/files/smalt-0.7.6.tar.gz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/SnpEff|SnpEff-4.3i|http://sourceforge.net/projects/snpeff/files/snpEff_v4_3i_core.zip|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/SolexaQA|SolexaQA-2.2|http://sourceforge.net/projects/solexaqa/files/src/SolexaQA_v.2.2.zip|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/SPAdes|SPAdes-3.13.0|http://spades.bioinf.spbau.ru/release3.11.1/dipspades_manual.html|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/sra_sdk|sra_sdk-2.2.2a|http://ftp-private.ncbi.nlm.nih.gov/sra/sdk/2.2.2a/sra_sdk-2.2.2a.tar.gz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/staden_doc|staden_doc-2.0.0_beta11|http://sourceforge.net/projects/staden/files/staden/2.0.0b11/staden_doc-2.0.0b11-src.tar.gz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/staden_doc|staden_doc-2.0.0_beta9|http://sourceforge.net/projects/staden/files/staden/2.0.0b9/staden_doc-2.0.0b9-src.tar.gz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/subread|subread-1.4.6|http://sourceforge.net/projects/subread/files/subread-1.4.6/subread-1.4.6-source.tar.gz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/tablet-bin|tablet-bin-1.17.08.17|https://ics.hutton.ac.uk/resources/tablet/installers/tablet_linux_x64_1_17_08_17.sh|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org|348029 6|sci-biology/tablet-bin|tablet-bin-1.17.08.17|https://ics.hutton.ac.uk/resources/tablet/installers/tablet_linux_x86_1_17_08_17.sh|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org|348029 5|sci-biology/wcd|wcd-0.6.3|http://wcdest.googlecode.com/files/wcd-express-0.6.3.tar.gz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org <<< WWT-BUG-ebuild_homepage_http_statuscode >>> 6|404|dev-perl/Bio-EnsEMBL|Bio-EnsEMBL-9999|https://metacpan.org/release/Bio-EnsEMBL|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|000|dev-python/GOGrapher|GOGrapher-9999|https://projects.dbbe.musc.edu/trac/GOGrapher|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|000|sci-biology/AlignGraph|AlignGraph-9999|http://bioinformatics.oxfordjournals.org/content/30/12/i319.long|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|404|sci-biology/arachne|arachne-46233|https://www.broadinstitute.org/crd/wiki|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|000|sci-biology/bambino|bambino-1.02|https://cgwb.nci.nih.gov/goldenPath/bamview/documentation/bam_utils.html|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|000|sci-biology/bambino|bambino-1.02|https://cgwb.nci.nih.gov/goldenPath/bamview/documentation/index.html|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|000|sci-biology/bambino|bambino-1.06|https://cgwb.nci.nih.gov/goldenPath/bamview/documentation/bam_utils.html|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|000|sci-biology/bambino|bambino-1.06|https://cgwb.nci.nih.gov/goldenPath/bamview/documentation/index.html|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|500|sci-biology/biopieces|biopieces-0.51|http://code.google.com/p/biopieces|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|500|sci-biology/biopieces|biopieces-9999|http://code.google.com/p/biopieces|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|404|sci-biology/blue|blue-1.1.2|http://www.bioinformatics.csiro.au/blue|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|404|sci-biology/blue|blue-1.1.3|http://www.bioinformatics.csiro.au/blue|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|000|sci-biology/cdbfasta|cdbfasta-0.1|http://compbio.dfci.harvard.edu/tgi/software|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|404|sci-biology/cd-hit-auxtools|cd-hit-auxtools-0.5|http://weizhong-lab.ucsd.edu/cd-hit/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|000|sci-biology/ffindex|ffindex-0.9.9.6|http://www.splashground.de/~andy/programs/FFindex|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|404|sci-biology/fgap-bin|fgap-bin-1.8.1|http://www.bioinfo.ufpr.br/fgap|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|404|sci-biology/fgap|fgap-1.8.1|http://www.bioinfo.ufpr.br/fgap|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|404|sci-biology/jannovar|jannovar-0.17|http://compbio.charite.de/contao/index.php/jannovar.html|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|403|sci-biology/KaKs_Calculator|KaKs_Calculator-2.0|https://www.sciencedirect.com/science/article/pii/S1672022910600083|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|000|sci-biology/karect|karect-1.0.0|http://bioinformatics.oxfordjournals.org/content/31/21/3421.abstract|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|000|sci-biology/MagicViewer|MagicViewer-1.2.1|http://bioinformatics.zj.cn/magicviewer|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|000|sci-biology/MaSuRCA|MaSuRCA-3.2.2|http://bioinformatics.oxfordjournals.org/content/29/21/2669|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|000|sci-biology/megahit|megahit-9999|http://bioinformatics.oxfordjournals.org/content/31/10/1674.abstract|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|000|sci-biology/mgblast|mgblast-0.1|http://compbio.dfci.harvard.edu/tgi/software/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|000|sci-biology/nrcl|nrcl-110625|http://compbio.dfci.harvard.edu/tgi/software/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|403|sci-biology/ParaAT|ParaAT-1.0|https://www.sciencedirect.com/science/article/pii/S0006291X12003518|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|000|sci-biology/plinkseq|plinkseq-0.10|http://atgu.mgh.harvard.edu/plinkseq|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|000|sci-biology/plinkseq|plinkseq-9999|http://atgu.mgh.harvard.edu/plinkseq|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|500|sci-biology/prot4EST|prot4EST-3.1b|http://www.compsysbio.org/lab/?q=prot4EST|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|000|sci-biology/psx|psx-0.1|http://compbio.dfci.harvard.edu/tgi/software/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|000|sci-biology/pvmsx|pvmsx-0.1|http://compbio.dfci.harvard.edu/tgi/software/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|000|sci-biology/reptile|reptile-1.1|http://aluru-sun.ece.iastate.edu/doku.php?id=reptile|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|000|sci-biology/sclust|sclust-0.1|http://compbio.dfci.harvard.edu/tgi/software/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|000|sci-biology/seqclean|seqclean-110625|http://compbio.dfci.harvard.edu/tgi/software/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|000|sci-biology/tclust|tclust-110625|http://compbio.dfci.harvard.edu/tgi/software/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|000|sci-biology/zmsort|zmsort-110625|http://compbio.dfci.harvard.edu/tgi/software/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org <<< WWT-BUG-ebuild_homepage_upstream_shutdown >>> 6|301|sci-biology/ampliconnoise|ampliconnoise-1.27|http://code.google.com/p/ampliconnoise/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|500|sci-biology/biopieces|biopieces-0.51|http://code.google.com/p/biopieces|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|500|sci-biology/biopieces|biopieces-9999|http://code.google.com/p/biopieces|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|301|sci-biology/CAT|CAT-1.3|http://code.google.com/p/composition-analysis-toolkit|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|301|sci-biology/est2assembly|est2assembly-1.08|http://code.google.com/p/est2assembly/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|301|sci-biology/est2assembly|est2assembly-9999|http://code.google.com/p/est2assembly/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|200|sci-biology/idba|idba-1.1.1|https://code.google.com/archive/p/hku-idba|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|301|sci-biology/KaKs_Calculator|KaKs_Calculator-1.2|https://code.google.com/p/kaks-calculator|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|301|sci-biology/KaKs_Calculator|KaKs_Calculator-2.0|https://code.google.com/p/kaks-calculator|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|301|sci-biology/ParaAT|ParaAT-1.0|https://code.google.com/p/paraat|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|301|sci-biology/STAR|STAR-9999|http://code.google.com/p/rna-star/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org|696714:716300:736056:741152 5|301|sci-biology/wcd|wcd-0.6.3|http://code.google.com/p/wcdest/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org <<< WWT-IMP-ebuild_homepage_301_redirections >>> 6|200|dev-python/bcbio-gff|bcbio-gff-0.6.4.ebuild|https://pypi.python.org/pypi/bcbio-gff|https://pypi.org/project/bcbio-gff/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|200|dev-python/ngslib|ngslib-1.1.19.ebuild|https://pypi.python.org/pypi/ngslib|https://pypi.org/project/ngslib/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|404|dev-python/psubprocess|psubprocess-0.1.2.ebuild|http://bioinf.comav.upv.es/psubprocess|https://bioinf.comav.upv.es/psubprocess|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|200|dev-python/py2bit|py2bit-0.2.1.ebuild|https://github.com/dpryan79/py2bit|https://github.com/deeptools/py2bit|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|200|dev-python/pyBigWig|pyBigWig-0.3.4.ebuild|https://github.com/dpryan79/pyBigWig|https://github.com/deeptools/pyBigWig|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|200|dev-python/pyvcf|pyvcf-0.6.8.ebuild|https://pypi.python.org/pypi/PyVCF|https://pypi.org/project/PyVCF/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|200|dev-python/shove|shove-0.6.6.ebuild|https://pypi.python.org/pypi/shove|https://pypi.org/project/shove/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|200|dev-python/xopen|xopen-0.1.1.ebuild|https://pypi.python.org/pypi/xopen|https://pypi.org/project/xopen/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|200|sci-biology/act-bin|act-bin-17.0.1.ebuild|http://www.sanger.ac.uk/science/tools/artemis-comparison-tool-act|https://www.sanger.ac.uk/tool/artemis-comparison-tool-act//|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|301|sci-biology/ampliconnoise|ampliconnoise-1.27.ebuild|http://code.google.com/p/ampliconnoise/|http://code.google.com/p/ampliconnoise/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|200|sci-biology/ANGLE-bin|ANGLE-bin-20080813-r1.ebuild|http://bioinformatics.cenargen.embrapa.br/portrait/download|http://bioinformatics.cenargen.embrapa.br/portrait/download/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|200|sci-biology/angsd|angsd-9999.ebuild|http://www.popgen.dk/angsd|http://www.popgen.dk/angsd/index.php/Main_Page|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|404|sci-biology/argo|argo-1.0.24.ebuild|http://www.broadinstitute.org/annotation/argo2|https://www.broadinstitute.org/annotation/argo2|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|000|sci-biology/argo|argo-1.0.24.ebuild|http://www.broadinstitute.org/annotation/argo|https://archive.broadinstitute.org/annotation/argo|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|404|sci-biology/argo-bin|argo-bin-1.0.31.ebuild|http://www.broadinstitute.org/annotation/argo2|https://www.broadinstitute.org/annotation/argo2|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|000|sci-biology/argo-bin|argo-bin-1.0.31.ebuild|http://www.broadinstitute.org/annotation/argo|https://archive.broadinstitute.org/annotation/argo|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|404|sci-biology/artemis|artemis-9999.ebuild|http://www.sanger.ac.uk/resources/software/artemis|https://www.sanger.ac.uk/science/search-tools-and-software|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|200|sci-biology/autoeditor|autoeditor-1.20.ebuild|http://sourceforge.net/apps/mediawiki/amos/index.php?title=AutoEditor|https://sourceforge.net/projects/amos/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|200|sci-biology/bambus|bambus-2.33.ebuild|http://sourceforge.net/apps/mediawiki/amos/index.php?title=AMOS|https://sourceforge.net/projects/amos/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|404|sci-biology/bambus|bambus-2.33.ebuild|http://www.tigr.org/software/bambus|https://www.jcvi.org/cms/research/software/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|404|sci-biology/caftools|caftools-2.0.2.ebuild|http://www.sanger.ac.uk/resources/software/caf|https://www.sanger.ac.uk/science/search-tools-and-software|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|200|sci-biology/CAT|CAT-1.3.ebuild|http://code.google.com/p/composition-analysis-toolkit|https://code.google.com/archive/p/composition-analysis-toolkit|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|200|sci-biology/cegma|cegma-2.5.ebuild|http://korflab.ucdavis.edu/datasets/cegma|http://korflab.ucdavis.edu/datasets/cegma/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|200|sci-biology/cg-cat|cg-cat-20150130.ebuild|http://bibiserv.techfak.uni-bielefeld.de/cgcat|https://bibiserv.cebitec.uni-bielefeld.de/cgcat|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|200|sci-biology/cgview-bin|cgview-bin-20131130.ebuild|http://stothard.afns.ualberta.ca/downloads/CCT|http://stothard.afns.ualberta.ca/downloads/CCT/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|200|sci-biology/conifer|conifer-0.2.2.ebuild|http://conifer.sf.net|http://conifer.sourceforge.net/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|404|sci-biology/conrad|conrad-1.ebuild|http://www.broadinstitute.org/annotation/conrad|https://www.broadinstitute.org/annotation/conrad|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|200|sci-biology/cramtools|cramtools-3.0.ebuild|http://www.ebi.ac.uk/ena/software/cram-toolkit|https://ena-docs.readthedocs.io/en/latest/retrieval/programmatic-access.html#cram-format|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|200|sci-biology/cross_genome|cross_genome-20140822.ebuild|http://www.sanger.ac.uk/science/tools/crossgenome|https://www.sanger.ac.uk/tool/crossgenome/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|200|sci-biology/deeptools|deeptools-2.5.0.ebuild|https://github.com/fidelram/deepTools|https://github.com/deeptools/deepTools|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|200|sci-biology/diamond|diamond-0.9.19.ebuild|http://ab.inf.uni-tuebingen.de/software/diamond|https://www.wsi.uni-tuebingen.de/lehrstuehle/algorithms-in-bioinformatics/software/diamond/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|200|sci-biology/EBARDenovo|EBARDenovo-1.2.2.ebuild|http://ebardenovo.sourceforge.net|https://sourceforge.net/projects/ebardenovo/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|200|sci-biology/ensembl-tools|ensembl-tools-86.ebuild|http://www.ensembl.org/info/docs/tools/vep/script|http://www.ensembl.org/info/docs/tools/vep/script/index.html|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|410|sci-biology/ePCR|ePCR-2.3.12.ebuild|http://www.ncbi.nlm.nih.gov/tools/epcr/|https://www.ncbi.nlm.nih.gov/tools/epcr/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|200|sci-biology/est2assembly|est2assembly-1.08.ebuild|http://code.google.com/p/est2assembly/|https://code.google.com/archive/p/est2assembly|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|404|sci-biology/ESTate|ESTate-0.5.ebuild|http://www.ebi.ac.uk/~guy/estate|https://www.ebi.ac.uk/~guy/estate|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|200|sci-biology/eugene|eugene-4.1d.ebuild|http://www.inra.fr/mia/T/EuGene/|https://www.inrae.fr/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|000|sci-biology/eval|eval-2.2.8.ebuild|http://mblab.wustl.edu/software.html|https://mblab.wustl.edu/software.html|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|200|sci-biology/exomiser-bin|exomiser-bin-7.2.1.ebuild|http://www.sanger.ac.uk/science/tools/exomiser|https://www.sanger.ac.uk/tool/exomiser/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|404|sci-biology/gap2caf|gap2caf-2.1.0.ebuild|http://www.sanger.ac.uk/resources/software/caf/|https://www.sanger.ac.uk/science/search-tools-and-software|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|200|sci-biology/gemini|gemini-9999.ebuild|http://gemini.readthedocs.org/en/latest|https://gemini.readthedocs.io/en/latest/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|000|sci-biology/geneid|geneid-1.4.4.ebuild|http://genome.crg.es/software/geneid|https://genome.crg.cat/software/geneid|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|200|sci-biology/germline|germline-1.5.1.ebuild|http://www.cs.columbia.edu/~gusev/germline|http://www.cs.columbia.edu/~gusev/germline/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|000|sci-biology/gfftools|gfftools-0.98d.ebuild|http://genome.crg.es/software/gfftools/GFF2PS.html|https://genome.crg.cat/software/gfftools/GFF2PS.html|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|200|sci-biology/hexamer|hexamer-19990330.ebuild|http://www.sanger.ac.uk/resources/software|https://www.sanger.ac.uk/science/tools/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|200|sci-biology/IMAGE|IMAGE-2.4.1.ebuild|https://sourceforge.net/apps/mediawiki/image2|https://sourceforge.net/projects/image2/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|200|sci-biology/imagej|imagej-1.51k.ebuild|http://rsb.info.nih.gov/ij/|https://imagej.nih.gov/ij/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|200|sci-biology/jannovar-bin|jannovar-bin-0.17.ebuild|http://compbio.charite.de|http://charite.github.io/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|301|sci-biology/KaKs_Calculator|KaKs_Calculator-1.2.ebuild|https://code.google.com/p/kaks-calculator|https://code.google.com/p/kaks-calculator|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|200|sci-biology/khmer|khmer-0.8.ebuild|https://github.com/ged-lab/khmer|https://github.com/dib-lab/khmer|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|200|sci-biology/kraken|kraken-1.0.ebuild|http://genomebiology.com/2014/15/3/R46|https://genomebiology.biomedcentral.com/articles/10.1186/gb-2014-15-3-r46|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|200|sci-biology/manatee-igs|manatee-igs-2.23.1.ebuild|http://manatee.sourceforge.net/igs|http://manatee.sourceforge.net/igs/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|200|sci-biology/MeV|MeV-4.8.1.ebuild|http://mev-tm4.sourceforge.net|https://sourceforge.net/projects/mev-tm4/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|404|sci-biology/MochiView|MochiView-1.45.ebuild|http://johnsonlab.ucsf.edu/mochi.html|http://www.johnsonlab.ucsf.edu/mochi.html|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|200|sci-biology/msautil|msautil-1.1-r1.ebuild|http://bioresearch.byu.edu/msa|http://bioresearch.byu.edu/msa/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|400|sci-biology/ncbi-blast+|ncbi-blast+-2.2.30.ebuild|http://www.ncbi.nlm.nih.gov/books/bv.fcgi?rid=toolkit|https://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/book/redirector.cgi?url=%2Fbooks%2Fbv.fcgi%3Frid%3Dtoolkit|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|404|sci-biology/ngs_backbone|ngs_backbone-1.4.0.ebuild|http://bioinf.comav.upv.es/ngs_backbone/index.html|https://bioinf.comav.upv.es/ngs_backbone/index.html|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|200|sci-biology/nwalign|nwalign-0.3.1.ebuild|https://pypi.python.org/pypi/nwalign|https://pypi.org/project/nwalign/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|200|sci-biology/OBO-Edit|OBO-Edit-2.1.0.ebuild|http://www.oboedit.org/|http://oboedit.org/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|200|sci-biology/ParaAT|ParaAT-1.0.ebuild|http://cbb.big.ac.cn/software|http://cbb.big.ac.cn/Software|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|200|sci-biology/ParaAT|ParaAT-1.0.ebuild|https://code.google.com/p/paraat|https://code.google.com/archive/p/paraat|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|404|sci-biology/phusion2|phusion2-3.0.ebuild|http://www.sanger.ac.uk/resources/software/phusion/|https://www.sanger.ac.uk/science/search-tools-and-software|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|404|sci-biology/phusion|phusion-2.1c.ebuild|http://www.sanger.ac.uk/resources/software/phusion/|https://www.sanger.ac.uk/science/search-tools-and-software|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|404|sci-biology/pileup|pileup-0.6.ebuild|http://www.sanger.ac.uk/resources/software/ssaha2/|https://www.sanger.ac.uk/science/search-tools-and-software|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|200|sci-biology/portrait|portrait-1.1.ebuild|http://bioinformatics.cenargen.embrapa.br/portrait|http://bioinformatics.cenargen.embrapa.br/portrait/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|200|sci-biology/prot4EST|prot4EST-3.1b.ebuild|http://www.biomedcentral.com/1471-2105/5/187|https://bmcbioinformatics.biomedcentral.com/articles/10.1186/1471-2105-5-187|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|200|sci-biology/pysamstats|pysamstats-0.24.2.ebuild|https://pypi.python.org/pypi/pysamstats|https://pypi.org/project/pysamstats/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|200|sci-biology/reapr|reapr-1.0.18.ebuild|http://www.sanger.ac.uk/science/tools/reapr|https://www.sanger.ac.uk/tool/reapr/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|200|sci-biology/Scaffolder-evaluation|Scaffolder-evaluation-9999.ebuild|http://genomebiology.com/2014/15/3/R42|https://genomebiology.biomedcentral.com/articles/10.1186/gb-2014-15-3-r42|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|200|sci-biology/seqtools|seqtools-4.44.1.ebuild|http://www.sanger.ac.uk/resources/software/seqtools|https://www.sanger.ac.uk/tool/seqtools//|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|000|sci-biology/sgp2|sgp2-1.1.ebuild|http://genome.crg.es/software/sgp2/|https://genome.crg.cat/software/sgp2/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|404|sci-biology/smalt-bin|smalt-bin-0.7.4.ebuild|http://www.sanger.ac.uk/resources/software/smalt/|https://www.sanger.ac.uk/science/search-tools-and-software|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|404|sci-biology/smalt|smalt-0.7.6.ebuild|http://www.sanger.ac.uk/resources/software/smalt/|https://www.sanger.ac.uk/science/search-tools-and-software|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|200|sci-biology/snphylo|snphylo-20140701.ebuild|http://chibba.pgml.uga.edu/snphylo|http://chibba.pgml.uga.edu/snphylo/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|404|sci-biology/ssaha2-bin|ssaha2-bin-2.5.5.ebuild|http://www.sanger.ac.uk/resources/software/ssaha2|https://www.sanger.ac.uk/science/search-tools-and-software|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|200|sci-biology/STAR|STAR-9999.ebuild|http://code.google.com/p/rna-star/|https://code.google.com/archive/p/rna-star|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|200|sci-biology/tagdust|tagdust-20101028.ebuild|http://genome.gsc.riken.jp/osc/english/dataresource|http://genome.gsc.riken.jp/osc/english/dataresource/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|301|sci-biology/wcd|wcd-0.6.3.ebuild|http://code.google.com/p/wcdest/|http://code.google.com/p/wcdest/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|200|sci-biology/zmap|zmap-2.12.0.ebuild|http://www.sanger.ac.uk/science/tools/zmap|https://www.sanger.ac.uk/tool/zmap//|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org <<< WWT-IMP-ebuild_homepage_redirection_http_to_https >>> 5|sci-biology/align_to_scf|align_to_scf-1.06.ebuild|http://genome.imb-jena.de/software/roche454ace2caf|https://genome.imb-jena.de/software/roche454ace2caf/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/amos|amos-9999.ebuild|http://sourceforge.net/projects/amos|https://sourceforge.net/projects/amos|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/bambus|bambus-2.33.ebuild|http://sourceforge.net/projects/amos/files/bambus|https://sourceforge.net/projects/amos/files/bambus|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/BBmap|BBmap-34.97.ebuild|http://sourceforge.net/projects/bbmap/|https://sourceforge.net/projects/bbmap/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/BRAKER|BRAKER-2.1.2.ebuild|http://bioinf.uni-greifswald.de/augustus/downloads|https://bioinf.uni-greifswald.de/augustus/downloads/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/BRAKER|BRAKER-2.1.2.ebuild|http://bioinf.uni-greifswald.de/bioinf/braker|https://bioinf.uni-greifswald.de/bioinf/braker/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/breakdancer|breakdancer-9999.ebuild|http://gmt.genome.wustl.edu/packages/breakdancer|https://gmt.genome.wustl.edu/packages/breakdancer/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/caftools|caftools-2.0.2.ebuild|http://www.ncbi.nlm.nih.gov/pmc/articles/PMC310697|https://www.ncbi.nlm.nih.gov/pmc/articles/PMC310697/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/CAT|CAT-1.3.ebuild|http://bigd.big.ac.cn/tools/cat|https://bigd.big.ac.cn/tools/cat|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/conrad|conrad-1.ebuild|http://sourceforge.net/projects/conradcrf|https://sourceforge.net/projects/conradcrf|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/coral|coral-1.4.ebuild|http://www.cs.helsinki.fi/u/lmsalmel/coral|https://www.cs.helsinki.fi/u/lmsalmel/coral/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/estscan|estscan-3.0.3.ebuild|http://sourceforge.net/projects/estscan/|https://sourceforge.net/projects/estscan/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/FLASH|FLASH-1.2.9.ebuild|http://sourceforge.net/projects/flashpage|https://sourceforge.net/projects/flashpage|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/full_lengther_next|full_lengther_next-0.6.2.ebuild|http://www.rubydoc.info/gems/full_lengther_next|https://www.rubydoc.info/gems/full_lengther_next|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/glean|glean-1.0.1.ebuild|http://sourceforge.net/projects/glean-gene|https://sourceforge.net/projects/glean-gene|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/graf-bin|graf-bin-20171212.ebuild|http://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/Software.cgi|https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/Software.cgi|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/InterMine|InterMine-0.98.ebuild|http://github.com/intermine/intermine|https://github.com/intermine/intermine|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/jellyfish|jellyfish-1.1.12.ebuild|http://www.cbcb.umd.edu/software/jellyfish|https://www.cbcb.umd.edu/software/jellyfish/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/jigsaw|jigsaw-3.2.10.ebuild|http://www.cbcb.umd.edu/software/jigsaw|https://www.cbcb.umd.edu/software/jigsaw/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/KaKs_Calculator|KaKs_Calculator-1.2.ebuild|http://bigd.big.ac.cn/tools/kaks|https://bigd.big.ac.cn/tools/kaks|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/KING|KING-20161017.ebuild|http://people.virginia.edu/~wc9c/KING|https://people.virginia.edu/~wc9c/KING/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/kraken|kraken-1.0.ebuild|http://ccb.jhu.edu/software/kraken|https://ccb.jhu.edu/software/kraken/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|dev-lua/lua-md5|lua-md5-1.2.ebuild|http://keplerproject.github.io/md5|https://keplerproject.github.io/md5/|mmokrejs@fold.natur.cuni.cz 5|sci-biology/mip-scaffolder|mip-scaffolder-0.6.ebuild|http://www.cs.helsinki.fi/u/lmsalmel/mip-scaffolder|https://www.cs.helsinki.fi/u/lmsalmel/mip-scaffolder/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/oases|oases-0.2.08.ebuild|http://www.ebi.ac.uk/~zerbino/oases|https://www.ebi.ac.uk/~zerbino/oases/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/ORFcor|ORFcor-20130507.ebuild|http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0058387|https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0058387|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/parafly|parafly-20130121.ebuild|http://sourceforge.net/projects/transdecoder/|https://sourceforge.net/projects/transdecoder/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/perga|perga-9999.ebuild|http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4252104|https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4252104/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/reaper|reaper-15348.ebuild|http://www.ebi.ac.uk/~stijn/reaper|https://www.ebi.ac.uk/~stijn/reaper/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/sambamba|sambamba-0.6.5.ebuild|http://lomereiter.github.io/sambamba|https://lomereiter.github.io/sambamba/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/scaffold_builder|scaffold_builder-20131122-r1.ebuild|http://edwards.sdsu.edu/scaffold_builder|https://edwards.sdsu.edu/scaffold_builder/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/scaffold_builder|scaffold_builder-20131122-r1.ebuild|http://sourceforge.net/projects/scaffold-b|https://sourceforge.net/projects/scaffold-b|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/scan_for_matches|scan_for_matches-20121220.ebuild|http://blog.theseed.org/servers/2010/07/scan-for-matches.html|https://blog.theseed.org/servers/2010/07/scan-for-matches.html|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/skewer-bin|skewer-bin-0.1.104.ebuild|http://sourceforge.net/projects/skewer|https://sourceforge.net/projects/skewer|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/SOAPdenovo2|SOAPdenovo2-241.ebuild|http://gigascience.biomedcentral.com/articles/10.1186/2047-217X-1-18|https://gigascience.biomedcentral.com/articles/10.1186/2047-217X-1-18|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/SolexaQA|SolexaQA-2.2.ebuild|http://sourceforge.net/projects/clview|https://sourceforge.net/projects/clview|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/SPAdes|SPAdes-3.13.0.ebuild|http://cab.spbu.ru/software/spades|https://cab.spbu.ru/software/spades/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/sra_sdk|sra_sdk-2.2.2a.ebuild|http://trace.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?cmd=show&f=faspftp_runs_v1&m=downloads&s=download_sra|https://trace.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?cmd=show&f=faspftp_runs_v1&m=downloads&s=download_sra|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/staden|staden-2.0.0_beta10.ebuild|http://sourceforge.net/projects/staden|https://sourceforge.net/projects/staden|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/staden|staden-9999.ebuild|http://sourceforge.net/projects/staden/|https://sourceforge.net/projects/staden/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/staden_doc|staden_doc-2.0.0_beta11.ebuild|http://sourceforge.net/projects/staden|https://sourceforge.net/projects/staden|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/trim_galore|trim_galore-0.4.0.ebuild|http://www.bioinformatics.babraham.ac.uk/projects/trim_galore|https://www.bioinformatics.babraham.ac.uk/projects/trim_galore/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/trowel|trowel-0.1.4.1.ebuild|http://sourceforge.net/projects/trowel-ec|https://sourceforge.net/projects/trowel-ec|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/wgs_tools|wgs_tools-9999.ebuild|http://www.ncbi.nlm.nih.gov/books/NBK279690/|https://www.ncbi.nlm.nih.gov/books/NBK279690/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 5|sci-biology/wgs_tools|wgs_tools-9999.ebuild|http://www.ncbi.nlm.nih.gov/genbank/wgs|https://www.ncbi.nlm.nih.gov/genbank/wgs/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org <<< WWT-IMP-ebuild_homepage_redirection_missing_slash_www >>> 6|sci-biology/hisat2|hisat2-2.0.5.ebuild|https://ccb.jhu.edu/software/hisat2|https://ccb.jhu.edu/software/hisat2/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/nextclip|nextclip-1.3.1.ebuild|https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3928519|https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3928519/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/stringtie|stringtie-1.3.4d.ebuild|https://ccb.jhu.edu/software/stringtie|https://ccb.jhu.edu/software/stringtie/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 7|sci-biology/tablet|tablet-1.17.08.17.ebuild|https://ics.hutton.ac.uk/tablet|https://ics.hutton.ac.uk/tablet/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 6|sci-biology/tablet-bin|tablet-bin-1.17.08.17.ebuild|https://ics.hutton.ac.uk/tablet|https://ics.hutton.ac.uk/tablet/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org <<< WWT-IMP-ebuild_homepage_unsync >>> 2|sci-biology/amos|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 2|sci-biology/idba|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 2|sci-biology/jellyfish|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 2|sci-biology/jtreeview|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 2|sci-biology/KaKs_Calculator|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org 2|sci-biology/staden|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org