List generated on 2024-11-21
Packages affected: 377
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QTY     Package
     4  sci-libs-pg2plplot
     4  sci-libs-gdcm
     4  sci-biology-vague-bin
     4  sci-biology-megahit
     4  sci-biology-fsl
     4  sci-astronomy-libthesky
     3  sci-physics-qcdloop
     3  sci-physics-hoppet
     3  sci-misc-praat
     3  sci-libs-wannier90
     3  sci-libs-pybids
     3  sci-libs-optpp
     3  sci-libs-mesquite
     3  sci-libs-lwpr
     3  sci-libs-fgsl
     3  sci-biology-twinscan
     3  sci-biology-trf-bin
     3  sci-biology-tagdust
     3  sci-biology-tabixpp
     3  sci-biology-stringtie
     3  sci-biology-msautil
     3  sci-biology-mrfast
     3  sci-biology-KaKs_Calculator
     3  sci-biology-AlignGraph
     3  dev-python-meshpy
     2  sys-cluster-modules
     2  sci-visualization-mricrogl
     2  sci-visualization-fsleyes
     2  sci-visualization-forge
     2  sci-physics-uproot
     2  sci-physics-tauola
     2  sci-physics-rivet
     2  sci-physics-pyhf
     2  sci-physics-openmx
     2  sci-physics-openloops
     2  sci-physics-madgraph5
     2  sci-physics-jaxodraw-bin
     2  sci-physics-formcalc
     2  sci-misc-stanford-tagger
     2  sci-misc-stanford-parser
     2  sci-misc-openfst
     2  sci-misc-irstlm
     2  sci-misc-elmer-fem
     2  sci-mathematics-pulp
     2  sci-mathematics-gap
     2  sci-mathematics-frama-c
     2  sci-libs-vtk
     2  sci-libs-starparse
     2  sci-libs-spyking-circus
     2  sci-libs-nipype
     2  sci-libs-mpfun90
     2  sci-libs-libsufr
     2  sci-libs-libflame-amd
     2  sci-libs-itk
     2  sci-libs-fox
     2  sci-libs-fdlibm
     2  sci-libs-cuba
     2  sci-libs-asl
     2  sci-libs-arpack
     2  sci-libs-aocl-sparse
     2  sci-libs-aocl-libm
     2  sci-electronics-minipro
     2  sci-chemistry-panav
     2  sci-chemistry-nmrpipe
     2  sci-chemistry-MotionCor2
     2  sci-chemistry-dl_poly
     2  sci-biology-wgs_tools
     2  sci-biology-VelvetOptimiser
     2  sci-biology-VarScan
     2  sci-biology-VarScan-bin
     2  sci-biology-ugene
     2  sci-biology-swissknife
     2  sci-biology-subread
     2  sci-biology-stacks
     2  sci-biology-SPAdes
     2  sci-biology-sff_dump
     2  sci-biology-seqtools
     2  sci-biology-samstat
     2  sci-biology-samri
     2  sci-biology-prinseq-lite
     2  sci-biology-portrait
     2  sci-biology-pileup
     2  sci-biology-perlprimer
     2  sci-biology-perga
     2  sci-biology-ParaAT
     2  sci-biology-pairagon
     2  sci-biology-opfvta_bidsdata
     2  sci-biology-ngs
     2  sci-biology-NGSEPcore-bin
     2  sci-biology-nextclip
     2  sci-biology-ncbi-vdb
     2  sci-biology-ncbi-tools++
     2  sci-biology-ncbi-blast+
     2  sci-biology-MuSeqBox
     2  sci-biology-multiqc
     2  sci-biology-mouse-brain-templates
     2  sci-biology-MochiView
     2  sci-biology-mip-scaffolder
     2  sci-biology-merlin
     2  sci-biology-MaSuRCA
     2  sci-biology-karect
     2  sci-biology-jellyfish
     2  sci-biology-IMAGE
     2  sci-biology-hisat2
     2  sci-biology-hexamer
     2  sci-biology-germline
     2  sci-biology-freebayes
     2  sci-biology-erpin
     2  sci-biology-dipy
     2  sci-biology-diamond
     2  sci-biology-deeptools
     2  sci-biology-dcmstack
     2  sci-biology-dargcc_bidsdata
     2  sci-biology-coral
     2  sci-biology-codonw
     2  sci-biology-cluster
     2  sci-biology-CAT
     2  sci-biology-cast-bin
     2  sci-biology-BRAKER
     2  sci-biology-bambus
     2  sci-biology-angsd
     2  sci-biology-ANGLE-bin
     2  sci-biology-align_to_scf
     2  media-gfx-brlcad
     2  dev-util-ndiff
     2  dev-python-zarr
     2  dev-python-xopen
     2  dev-python-ufl
     2  dev-python-stopit
     2  dev-python-specutils
     2  dev-python-snakemake-interface-executor-plugins
     2  dev-python-smart-open
     2  dev-python-schema
     2  dev-python-reproject
     2  dev-python-pyvote
     2  dev-python-pytest-doctestplus
     2  dev-python-pyBigWig
     2  dev-python-pybedtools
     2  dev-python-pyarrow
     2  dev-python-py2bit
     2  dev-python-numpy
     2  dev-python-logzero
     2  dev-python-isal
     2  dev-python-immutables
     2  dev-python-hdf5storage
     2  dev-python-geopandas
     2  dev-python-fiat
     2  dev-python-ffc
     2  dev-python-ccdproc
     2  dev-python-cadquery
     2  dev-python-asdf
     2  dev-perl-go-db-perl
     2  dev-perl-Bio-BigFile
     2  dev-ml-lacaml
     2  dev-libs-simclist
     2  dev-libs-lief
     2  dev-libs-apache-arrow
     2  dev-java-fits
     1  x11-misc-envytools
     1  sys-devel-oneDPL
     1  sys-devel-ittapi
     1  sys-devel-DPC++
     1  sys-cluster-easybuild
     1  sci-visualization-fsleyes-widgets
     1  sci-visualization-fsleyes-props
     1  sci-physics-qgraf
     1  sci-physics-pylhe
     1  sci-physics-pyhepmc
     1  sci-physics-photos
     1  sci-physics-particle
     1  sci-physics-oneloop
     1  sci-physics-mc-tester
     1  sci-physics-lhapdf-sets
     1  sci-physics-hepunits
     1  sci-physics-cuttools
     1  sci-physics-atompaw
     1  sci-misc-pqdump
     1  sci-misc-jwnl
     1  sci-misc-finomaton
     1  sci-mathematics-Oid
     1  sci-libs-xblas
     1  sci-libs-spams-python
     1  sci-libs-scikits_video
     1  sci-libs-pfft
     1  sci-libs-oneMKL
     1  sci-libs-nipy
     1  sci-libs-nibabel
     1  sci-libs-nexus
     1  sci-libs-libmaus2
     1  sci-libs-labbookdb
     1  sci-libs-HDF5Plugin-Zstandard
     1  sci-libs-handyg
     1  sci-libs-fast5
     1  sci-libs-daal4py
     1  sci-libs-ccif
     1  sci-libs-blis-amd
     1  sci-libs-bids-validator
     1  sci-chemistry-rosetta-tools
     1  sci-chemistry-pymol-plugins-psico
     1  sci-chemistry-pales-bin
     1  sci-chemistry-nmrview
     1  sci-chemistry-mage
     1  sci-chemistry-ligplot+
     1  sci-chemistry-gamess
     1  sci-chemistry-erkale
     1  sci-chemistry-drawxtl
     1  sci-biology-YASRA
     1  sci-biology-weblogo
     1  sci-biology-vt
     1  sci-biology-verifyBamID
     1  sci-biology-tmhmm
     1  sci-biology-tigmint
     1  sci-biology-SSAKE
     1  sci-biology-sra-tools
     1  sci-biology-SolexaQA
     1  sci-biology-snpomatic
     1  sci-biology-smalt
     1  sci-biology-smalt-bin
     1  sci-biology-skewer-bin
     1  sci-biology-signalp
     1  sci-biology-sickle
     1  sci-biology-sga
     1  sci-biology-screed
     1  sci-biology-sabre
     1  sci-biology-ruffus
     1  sci-biology-RSeQC
     1  sci-biology-rnaplex
     1  sci-biology-quast
     1  sci-biology-pysamstats
     1  sci-biology-pyfaidx
     1  sci-biology-pybedtools
     1  sci-biology-prokka
     1  sci-biology-polyphen
     1  sci-biology-phusion2
     1  sci-biology-open-ephys-gui
     1  sci-biology-ONTO-PERL
     1  sci-biology-nwalign3
     1  sci-biology-nitime
     1  sci-biology-nilearn
     1  sci-biology-NGSEPcore
     1  sci-biology-ncbi-genome-download
     1  sci-biology-nanopolish
     1  sci-biology-miranda
     1  sci-biology-minimap2
     1  sci-biology-lucy
     1  sci-biology-lighter
     1  sci-biology-libblasr
     1  sci-biology-libBigWig
     1  sci-biology-lastz
     1  sci-biology-last
     1  sci-biology-kraken
     1  sci-biology-kmergenie
     1  sci-biology-KING
     1  sci-biology-khmer
     1  sci-biology-kat
     1  sci-biology-jtreeview-bin
     1  sci-biology-irsabi_bidsdata
     1  sci-biology-graf-bin
     1  sci-biology-gffcompare
     1  sci-biology-genomeview-bin
     1  sci-biology-gemini
     1  sci-biology-fastp
     1  sci-biology-fastdnaml
     1  sci-biology-epga
     1  sci-biology-edena
     1  sci-biology-drlfom_bidsdata
     1  sci-biology-deeptools-intervals
     1  sci-biology-cross_genome
     1  sci-biology-cnrun
     1  sci-biology-clview
     1  sci-biology-chiron
     1  sci-biology-canu
     1  sci-biology-bruker2nifti
     1  sci-biology-BRANCH
     1  sci-biology-BlastToSam
     1  sci-biology-biobambam2
     1  sci-biology-behaviopy
     1  sci-biology-bedops
     1  sci-biology-BBmap
     1  sci-biology-ants
     1  sci-biology-aghermann
     1  media-libs-scifio-jai-imageio
     1  media-libs-libgfx
     1  media-libs-imglib2
     1  dev-vcs-datalad
     1  dev-vcs-dandi-cli
     1  dev-python-zarr_checksum
     1  dev-python-wraps
     1  dev-python-unyt
     1  dev-python-umap-learn
     1  dev-python-typish
     1  dev-python-traits
     1  dev-python-texext
     1  dev-python-snuggs
     1  dev-python-snakemake
     1  dev-python-scooby
     1  dev-python-resample
     1  dev-python-rasterstats
     1  dev-python-rasterio
     1  dev-python-pyviz_comms
     1  dev-python-pyvista
     1  dev-python-python-vxi11
     1  dev-python-python-gantt
     1  dev-python-pyout
     1  dev-python-pynwb
     1  dev-python-pynndescent
     1  dev-python-pyct
     1  dev-python-pybind11-stubgen
     1  dev-python-POT
     1  dev-python-PeakUtils
     1  dev-python-panel
     1  dev-python-palettable
     1  dev-python-nwbinspector
     1  dev-python-numba-dpex
     1  dev-python-num2words
     1  dev-python-multimethod
     1  dev-python-matrix2latex
     1  dev-python-matlabengine
     1  dev-python-looseversion
     1  dev-python-lazy_ops
     1  dev-python-kmapper
     1  dev-python-jupyterlab_launcher
     1  dev-python-json_tricks
     1  dev-python-jacobi
     1  dev-python-imageutils
     1  dev-python-holoviews
     1  dev-python-hist
     1  dev-python-hdmf-zarr
     1  dev-python-gwcs
     1  dev-python-grabbit
     1  dev-python-gmsh_interop
     1  dev-python-gffpandas
     1  dev-python-gammapy
     1  dev-python-fslpy
     1  dev-python-fscacher
     1  dev-python-Forthon
     1  dev-python-ezdxf
     1  dev-python-dpnp
     1  dev-python-dpctl
     1  dev-python-docstring-parser
     1  dev-python-dnaio
     1  dev-python-dijitso
     1  dev-python-delegator
     1  dev-python-datrie
     1  dev-python-dandi-schema
     1  dev-python-cymbal
     1  dev-python-conda-inject
     1  dev-python-colorlover
     1  dev-python-cadquery-pywrap
     1  dev-python-cadquery-ocp
     1  dev-python-bz2file
     1  dev-python-blessings
     1  dev-python-bcbio-gff
     1  dev-python-av
     1  dev-python-astroquery
     1  dev-python-astropy-helpers
     1  dev-python-astropy-healpix
     1  dev-python-arrayfire-python
     1  dev-python-amply
     1  dev-python-affine
     1  dev-perl-Time-Progress
     1  dev-perl-Text-RecordParser
     1  dev-perl-Text-ParseWords
     1  dev-perl-Text-Graph
     1  dev-perl-Set-IntSpan-Fast
     1  dev-perl-Scalar-Util-Numeric
     1  dev-perl-Log-Cabin
     1  dev-perl-DBIx-DBStag
     1  dev-perl-Config-Std
     1  dev-perl-BTLib
     1  dev-perl-Bio-DB-Das-Chado
     1  dev-perl-Algorithm-Loops
     1  dev-libs-memkind
     1  dev-lang-pgi
     1  dev-lang-conceptual
     1  dev-java-jama
     1  app-office-visidata