List generated on 2018-05-26
Packages affected: 460
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QTY     Package
     6  sci-misc-foma
     6  sci-mathematics-Macaulay2
     5  sci-physics-root
     5  sci-mathematics-ufc
     5  sci-biology-imagej
     5  sci-biology-conrad
     4  sys-devel-gdebugger
     4  sys-cluster-mpich2
     4  sys-cluster-htcondor
     4  sci-physics-abinit
     4  sci-misc-sfst
     4  sci-misc-omorfi
     4  sci-misc-kotus-sanalista
     4  sci-libs-openblas
     4  sci-libs-modglue
     4  sci-libs-med
     4  sci-libs-k3match
     4  sci-libs-cblas-reference
     4  sci-chemistry-modeller
     4  sci-chemistry-mddnmr
     4  sci-biology-wcd
     4  sci-biology-tablet
     4  sci-biology-scaffold_builder
     4  sci-biology-reptile
     4  sci-biology-KaKs_Calculator
     4  sci-biology-hydra-sv
     4  sci-biology-Gambit
     4  sci-biology-est2assembly
     4  sci-biology-cluster
     4  sci-biology-cgview-bin
     4  sci-biology-caftools
     4  sci-biology-ampliconnoise
     4  sci-biology-amos
     4  dev-libs-fortrancl
     4  dev-libs-asmjit
     3  x11-libs-tr
     3  sys-cluster-ovis
     3  sys-cluster-openmpi
     3  sys-cluster-mvapich2
     3  sys-cluster-lustre
     3  sci-visualization-v_sim
     3  sci-physics-vgm
     3  sci-physics-geant-vmc
     3  sci-misc-elmer-front
     3  sci-misc-elmer-fem
     3  sci-mathematics-pff
     3  sci-mathematics-petsc
     3  sci-mathematics-kayali
     3  sci-mathematics-cadabra
     3  sci-mathematics-alt-ergo
     3  sci-libs-openlibm
     3  sci-libs-libgeodecomp
     3  sci-libs-fgsl
     3  sci-libs-fdlibm
     3  sci-libs-elmer-hutiter
     3  sci-libs-elmer-eio
     3  sci-libs-dcmtk
     3  sci-libs-Cgraph
     3  sci-libs-calculix-cgx
     3  sci-libs-calculix-ccx
     3  sci-libs-arrayfire
     3  sci-libs-amber99sb_phipsi
     3  sci-libs-amber99sbnmr
     3  sci-libs-amber99sbnmr-ildn
     3  sci-geosciences-qgis
     3  sci-chemistry-usf-tools
     3  sci-chemistry-trajng
     3  sci-chemistry-smmp
     3  sci-chemistry-shiftx2
     3  sci-chemistry-panav
     3  sci-chemistry-nmrpipe
     3  sci-chemistry-nMOLDYN
     3  sci-chemistry-modelfree
     3  sci-chemistry-mgltools-utpackages
     3  sci-chemistry-mgltools-geomutils
     3  sci-chemistry-gnome-chemistry-utils
     3  sci-chemistry-erkale
     3  sci-chemistry-dl_poly
     3  sci-chemistry-curvefit
     3  sci-chemistry-cpmgfit
     3  sci-chemistry-chooch
     3  sci-biology-ugene
     3  sci-biology-trim_galore
     3  sci-biology-tablet-bin
     3  sci-biology-STAR
     3  sci-biology-staden
     3  sci-biology-SolexaQA
     3  sci-biology-SOAPdenovo2
     3  sci-biology-skewer-bin
     3  sci-biology-sequin
     3  sci-biology-reapr
     3  sci-biology-quorum
     3  sci-biology-picard
     3  sci-biology-OBO-Edit
     3  sci-biology-mavid
     3  sci-biology-MaSuRCA
     3  sci-biology-MagicViewer
     3  sci-biology-kraken
     3  sci-biology-jellyfish
     3  sci-biology-jannovar-bin
     3  sci-biology-IMAGE
     3  sci-biology-igv
     3  sci-biology-idba
     3  sci-biology-graf-bin
     3  sci-biology-germline
     3  sci-biology-gatk
     3  sci-biology-fsl
     3  sci-biology-fgap
     3  sci-biology-estscan
     3  sci-biology-ESTate
     3  sci-biology-ensembl-tools
     3  sci-biology-EBARDenovo
     3  sci-biology-deeptools
     3  sci-biology-blue
     3  sci-biology-blat
     3  sci-biology-biopieces
     3  sci-biology-bambus
     3  sci-biology-bambino
     3  sci-biology-augustus
     3  sci-biology-argo
     3  sci-biology-argo-bin
     3  sci-astronomy-zebra
     3  sci-astronomy-starlink-bin
     3  sci-astronomy-bpz
     3  net-ftp-bbftp-server
     3  media-gfx-librecad
     3  dev-util-VampirTrace
     3  dev-python-PyVISA
     3  dev-python-pynomo
     3  dev-python-meshpy
     3  dev-python-astropy
     3  dev-python-astropysics
     3  dev-libs-simclist
     3  dev-libs-mxml
     3  dev-libs-libunzip
     3  dev-libs-libgdev
     3  dev-libs-libcuda
     3  dev-lang-pgi
     3  dev-lang-path64
     3  dev-java-jogl
     3  dev-java-jlatexmath-fop
     3  dev-java-hdf-java
     3  dev-cpp-eigen
     3  app-portage-g-octave
     3  app-benchmarks-numbench
     3  app-admin-eselect
     2  x11-misc-envytools
     2  virtual-perl-encoding-warnings
     2  sys-cluster-mpich
     2  sys-cluster-mpe2
     2  sys-cluster-modules
     2  sys-cluster-empi
     2  sys-cluster-blcr
     2  sci-physics-tauola
     2  sci-physics-quinoa
     2  sci-physics-openmx
     2  sci-physics-genfit
     2  sci-physics-fullprof-bin
     2  sci-physics-bigdft
     2  sci-physics-atompaw
     2  sci-misc-simx
     2  sci-misc-opennlp-maxent
     2  sci-misc-openfst
     2  sci-misc-jwnl
     2  sci-misc-finomaton
     2  sci-misc-elmer-post
     2  sci-misc-elmer-meshgen2d
     2  sci-misc-elmer-gui
     2  sci-misc-elmer-elmergrid
     2  sci-mathematics-z3
     2  sci-mathematics-why3
     2  sci-mathematics-tisean
     2  sci-mathematics-slepc
     2  sci-mathematics-scilab
     2  sci-mathematics-pulp
     2  sci-mathematics-netgen
     2  sci-mathematics-mdp
     2  sci-mathematics-ltl2ba
     2  sci-mathematics-lattE-macchiato
     2  sci-mathematics-htk
     2  sci-mathematics-gambit
     2  sci-mathematics-dsfmt
     2  sci-mathematics-dolfin
     2  sci-mathematics-cipi
     2  sci-mathematics-aribas
     2  sci-libs-zarja
     2  sci-libs-xblas
     2  sci-libs-wannier90
     2  sci-libs-symengine
     2  sci-libs-starparse
     2  sci-libs-pydicom
     2  sci-libs-omalloc
     2  sci-libs-ni-visa
     2  sci-libs-mkl
     2  sci-libs-mesquite
     2  sci-libs-matc
     2  sci-libs-lwpr
     2  sci-libs-libspatialindex
     2  sci-libs-lib2bit
     2  sci-libs-lapack-reference
     2  sci-libs-jhdf5
     2  sci-libs-itk
     2  sci-libs-ipp
     2  sci-libs-iml
     2  sci-libs-gotoblas2
     2  sci-libs-gmsh
     2  sci-libs-geom
     2  sci-libs-fox
     2  sci-libs-factory
     2  sci-libs-dealii
     2  sci-libs-blastdb
     2  sci-libs-blas-reference
     2  sci-libs-bigdft-abi
     2  sci-libs-asl
     2  sci-libs-amdlibm
     2  sci-geosciences-pydap
     2  sci-geosciences-pydap_responses_kml
     2  sci-geosciences-pydap_handlers_sqlite
     2  sci-geosciences-pydap_handlers_proxy
     2  sci-geosciences-pydap_handlers_netcdf
     2  sci-geosciences-pydap_handlers_nca
     2  sci-geosciences-pydap_handlers_hdf5
     2  sci-geosciences-pydap_handlers_csv
     2  sci-electronics-tnt
     2  sci-chemistry-rosetta
     2  sci-chemistry-rosetta-tools
     2  sci-chemistry-pymol
     2  sci-chemistry-pymol-plugins-psico
     2  sci-chemistry-polygon
     2  sci-chemistry-pesto
     2  sci-chemistry-openbabel
     2  sci-chemistry-openbabel-ruby
     2  sci-chemistry-openbabel-python
     2  sci-chemistry-openbabel-perl
     2  sci-chemistry-openbabel-java
     2  sci-chemistry-nmrview
     2  sci-chemistry-NMRdyn
     2  sci-chemistry-module2
     2  sci-chemistry-mgltools-opengltk
     2  sci-chemistry-mdsctk
     2  sci-chemistry-mage
     2  sci-chemistry-ligplot+
     2  sci-chemistry-GromacsWrapper
     2  sci-chemistry-gamess
     2  sci-chemistry-freeon
     2  sci-chemistry-dssp2pdb
     2  sci-chemistry-concoord
     2  sci-chemistry-chimera-bin
     2  sci-chemistry-camshift
     2  sci-chemistry-burrow-owl
     2  sci-chemistry-ball
     2  sci-chemistry-ambertools
     2  sci-biology-zmsort
     2  sci-biology-zmap
     2  sci-biology-wise
     2  sci-biology-wgs_tools
     2  sci-biology-wgs-assembler
     2  sci-biology-VarScan
     2  sci-biology-VarScan-bin
     2  sci-biology-twinscan
     2  sci-biology-trowel
     2  sci-biology-trimmomatic
     2  sci-biology-trans-abyss
     2  sci-biology-tigr-foundation-libs
     2  sci-biology-tclust
     2  sci-biology-tagdust
     2  sci-biology-stringtie
     2  sci-biology-staden_doc
     2  sci-biology-SSAKE
     2  sci-biology-ssaha2-bin
     2  sci-biology-sra_sdk
     2  sci-biology-SPAdes
     2  sci-biology-snphylo
     2  sci-biology-SnpEff
     2  sci-biology-smalt
     2  sci-biology-smalt-bin
     2  sci-biology-seqtools
     2  sci-biology-seq_crumbs
     2  sci-biology-seqclean
     2  sci-biology-screed
     2  sci-biology-sclust
     2  sci-biology-Scaffolder-evaluation
     2  sci-biology-sambamba
     2  sci-biology-reaper
     2  sci-biology-Rcorrector
     2  sci-biology-quicktree
     2  sci-biology-pysurfer
     2  sci-biology-pysamstats
     2  sci-biology-pyfaidx
     2  sci-biology-pybedtools
     2  sci-biology-pvmsx
     2  sci-biology-psx
     2  sci-biology-prot4EST
     2  sci-biology-proda
     2  sci-biology-portrait
     2  sci-biology-polyphen
     2  sci-biology-plink
     2  sci-biology-plinkseq
     2  sci-biology-pileup
     2  sci-biology-phusion
     2  sci-biology-phusion2
     2  sci-biology-perga
     2  sci-biology-pb-honey
     2  sci-biology-parafly
     2  sci-biology-ORFcor
     2  sci-biology-oases
     2  sci-biology-nwalign
     2  sci-biology-nrcl
     2  sci-biology-ngsview
     2  sci-biology-NGSTools
     2  sci-biology-ngs_backbone
     2  sci-biology-nextclip
     2  sci-biology-ncbi-tools++
     2  sci-biology-ncbi-blast+
     2  sci-biology-msautil
     2  sci-biology-mrsfast
     2  sci-biology-mRNAmarkup
     2  sci-biology-mreps
     2  sci-biology-mothur
     2  sci-biology-MolBioLib
     2  sci-biology-MochiView
     2  sci-biology-mne-python
     2  sci-biology-mira
     2  sci-biology-miranda
     2  sci-biology-mgblast
     2  sci-biology-MeV
     2  sci-biology-metaseq
     2  sci-biology-merlin
     2  sci-biology-megahit
     2  sci-biology-manatee-igs
     2  sci-biology-KING
     2  sci-biology-khmer
     2  sci-biology-karect
     2  sci-biology-jtreeview
     2  sci-biology-jigsaw
     2  sci-biology-jannovar
     2  sci-biology-InterMine
     2  sci-biology-ICC
     2  sci-biology-hisat2
     2  sci-biology-hexamer
     2  sci-biology-glean
     2  sci-biology-gfftools
     2  sci-biology-genomeview-bin
     2  sci-biology-genepop
     2  sci-biology-geneid
     2  sci-biology-gemini
     2  sci-biology-gbench
     2  sci-biology-gap2caf
     2  sci-biology-FLASH
     2  sci-biology-fgap-bin
     2  sci-biology-ffindex
     2  sci-biology-fastqc
     2  sci-biology-fastdnaml
     2  sci-biology-exomiser-bin
     2  sci-biology-eugene
     2  sci-biology-ePCR
     2  sci-biology-dipy
     2  sci-biology-diamond
     2  sci-biology-dcmstack
     2  sci-biology-dawg
     2  sci-biology-cross_genome
     2  sci-biology-cramtools
     2  sci-biology-consed2gap
     2  sci-biology-conifer
     2  sci-biology-conform-gt
     2  sci-biology-cnrun
     2  sci-biology-clover
     2  sci-biology-cg-cat
     2  sci-biology-cegma
     2  sci-biology-cd-hit
     2  sci-biology-cd-hit-auxtools
     2  sci-biology-cdbfasta
     2  sci-biology-breakdancer
     2  sci-biology-BRAKER
     2  sci-biology-blasr
     2  sci-biology-bfast
     2  sci-biology-bedops
     2  sci-biology-beagle
     2  sci-biology-beaglecall
     2  sci-biology-BBmap
     2  sci-biology-barnacle
     2  sci-biology-autoeditor
     2  sci-biology-Atlas2
     2  sci-biology-artemis
     2  sci-biology-arachne
     2  sci-biology-angsd
     2  sci-biology-ANGLE-bin
     2  sci-biology-align_to_scf
     2  sci-biology-AlignGraph
     2  sci-biology-aghermann
     2  sci-biology-act-bin
     2  sci-astronomy-zpeg
     2  sci-astronomy-weightwatcher
     2  sci-astronomy-stuff
     2  sci-astronomy-mosstack
     2  sci-astronomy-missfits
     2  sci-astronomy-casapy-bin
     2  net-misc-cernbox-client
     2  net-misc-bbscp
     2  net-ftp-bbftp-client
     2  media-libs-libgfx
     2  media-gfx-PhiloGL
     2  media-gfx-brlcad
     2  dev-util-nvidia-cuda-gdk
     2  dev-util-f90cache
     2  dev-util-bazel
     2  dev-util-amdapp
     2  dev-python-xopen
     2  dev-python-symengine
     2  dev-python-shove
     2  dev-python-RecSQL
     2  dev-python-PyVISA-py
     2  dev-python-pyvcf
     2  dev-python-pythoncgns
     2  dev-python-pyhdf
     2  dev-python-pydotplus
     2  dev-python-pyBigWig
     2  dev-python-py2bit
     2  dev-python-psubprocess
     2  dev-python-prov
     2  dev-python-prettyplotlib
     2  dev-python-opal-client
     2  dev-python-ngslib
     2  dev-python-newrelic
     2  dev-python-matplotlib-venn
     2  dev-python-GOGrapher
     2  dev-python-dimensionful
     2  dev-python-cosmocalc
     2  dev-python-coords
     2  dev-python-brewer2mpl
     2  dev-python-bcbio-gff
     2  dev-python-arrayfire-python
     2  dev-perl-opal-client
     2  dev-perl-Lab-VISA
     2  dev-perl-BTLib
     2  dev-perl-Bio-EnsEMBL
     2  dev-ml-lacaml
     2  dev-libs-intel-common
     2  dev-lang-vtune
     2  dev-lang-ifc
     2  dev-lang-icc
     2  dev-java-netcdf
     2  dev-java-jrosetta
     2  dev-java-jlatexmath
     2  dev-java-jgraphx
     2  dev-java-gluegen
     2  dev-java-flexdock
     2  dev-java-fits
     2  dev-cpp-icnc
     2  dev-cpp-growler
     2  dev-cpp-growler-thread
     2  dev-cpp-growler-math
     2  dev-cpp-growler-link
     2  dev-cpp-growler-core
     2  dev-cpp-growler-arch
     2  app-vim-vim-gromacs
     2  app-doc-scalapack-docs
     2  app-doc-root-docs
     2  app-doc-lapack-docs
     2  app-doc-blas-docs