8|200|2023-07-04|dev-python/py2bit|py2bit-0.3.0.ebuild|https://github.com/dpryan79/py2bit|https://github.com/deeptools/py2bit|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
8|200|2023-07-04|dev-python/py2bit|py2bit-0.3.1.ebuild|https://github.com/dpryan79/py2bit|https://github.com/deeptools/py2bit|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
8|200|2023-07-04|dev-python/py2bit|py2bit-9999.ebuild|https://github.com/dpryan79/py2bit|https://github.com/deeptools/py2bit|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
7|200|2023-07-04|sci-biology/align_to_scf|align_to_scf-1.06.ebuild|http://genome.imb-jena.de/software/roche454ace2caf|https://genome.leibniz-fli.de/software/roche454ace2caf/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
7|200|2023-07-04|sci-biology/ANGLE-bin|ANGLE-bin-20080813-r1.ebuild|http://bioinformatics.cenargen.embrapa.br/portrait/download|http://bioinformatics.cenargen.embrapa.br/portrait/download/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
7|200|2023-07-04|sci-biology/angsd|angsd-0.933.ebuild|http://www.popgen.dk/angsd|http://www.popgen.dk/angsd/index.php/Main_Page|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
8|200|2023-07-04|sci-biology/bambus|bambus-2.33-r2.ebuild|https://sourceforge.net/apps/mediawiki/amos/index.php?title=AMOS|https://sourceforge.net/projects/amos/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
7|200|2023-07-04|sci-biology/BRAKER|BRAKER-2.1.2.ebuild|http://bioinf.uni-greifswald.de/augustus/downloads|http://bioinf.uni-greifswald.de/augustus/downloads/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
7|200|2023-07-04|sci-biology/BRAKER|BRAKER-2.1.2.ebuild|http://bioinf.uni-greifswald.de/bioinf/braker|http://bioinf.uni-greifswald.de/bioinf/braker/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
7|200|2023-07-04|sci-biology/cast-bin|cast-bin-20080813.ebuild|http://bioinformatics.cenargen.embrapa.br/portrait/download|http://bioinformatics.cenargen.embrapa.br/portrait/download/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
7|200|2023-07-04|sci-biology/CAT|CAT-1.3.ebuild|https://bigd.big.ac.cn/tools/cat|https://ngdc.cncb.ac.cn/tools/cat|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
7|200|2024-01-01|sci-biology/cluster|cluster-1.59.ebuild|http://bonsai.hgc.jp/~mdehoon/software/cluster|http://bonsai.hgc.jp/~mdehoon/software/cluster/|je_fro@gentoo.org:sci-biology@gentoo.org
7|200|2023-07-04|sci-biology/coral|coral-1.4.1.ebuild|https://www.cs.helsinki.fi/u/lmsalmel/coral|https://www.cs.helsinki.fi/u/lmsalmel/coral/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
7|200|2023-07-04|sci-biology/diamond|diamond-2.0.6.ebuild|http://ab.inf.uni-tuebingen.de/software/diamond|https://uni-tuebingen.de/fakultaeten/mathematisch-naturwissenschaftliche-fakultaet/fachbereiche/informatik/lehrstuehle/algorithms-in-bioinformatics/software/diamond|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
7|200|2023-07-04|sci-biology/erpin|erpin-5.5b.ebuild|http://rna.igmors.u-psud.fr|http://rssf.i2bc.paris-saclay.fr/|sci-biology@gentoo.org
7|200|2023-07-04|sci-biology/freebayes|freebayes-1.3.5.ebuild|https://github.com/ekg/freebayes|https://github.com/freebayes/freebayes|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
7|200|2023-07-04|sci-biology/germline|germline-1.5.3.ebuild|http://genome.cshlp.org/content/19/2/318.full|https://genome.cshlp.org/content/19/2/318.full|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
7|200|2023-07-04|sci-biology/hexamer|hexamer-19990330.ebuild|http://www.sanger.ac.uk/resources/software|https://www.sanger.ac.uk/science/tools/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
8|200|2023-07-04|sci-biology/hisat2|hisat2-2.2.1.ebuild|https://daehwankimlab.github.io/hisat2|https://daehwankimlab.github.io/hisat2/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
7|200|2023-07-04|sci-biology/IMAGE|IMAGE-2.4.1.ebuild|https://sourceforge.net/apps/mediawiki/image2|https://sourceforge.net/projects/image2/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
8|200|2023-12-21|sci-biology/imagej|imagej-1.54h-r1.ebuild|https://imagej.nih.gov/ij/|https://imagej.net/ij/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
8|200|2023-12-21|sci-biology/imagej|imagej-9999.ebuild|https://imagej.nih.gov/ij/|https://imagej.net/ij/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
7|200|2023-07-04|sci-biology/KaKs_Calculator|KaKs_Calculator-1.2.ebuild|https://bigd.big.ac.cn/tools/kaks|https://ngdc.cncb.ac.cn/tools/kaks|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
7|200|2023-07-04|sci-biology/mip-scaffolder|mip-scaffolder-0.6.ebuild|http://www.cs.helsinki.fi/u/lmsalmel/mip-scaffolder|https://www.cs.helsinki.fi/u/lmsalmel/mip-scaffolder/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
7|200|2023-07-04|sci-biology/mrfast|mrfast-2.6.0.1.ebuild|http://mrfast.sourceforge.net/|https://mrfast.sourceforge.net/|sci-biology@gentoo.org
8|200|2023-07-04|sci-biology/MuSeqBox|MuSeqBox-5.7.2021.ebuild|http://brendelgroup.org/bioinformatics2go/MuSeqBox.php|https://brendelgroup.org/bioinformatics2go/MuSeqBox.php|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
7|200|2023-07-04|sci-biology/nextclip|nextclip-1.3.1.ebuild|https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3928519|https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3928519/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
7|200|2023-07-04|sci-biology/perga|perga-9999.ebuild|http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4252104|https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4252104/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
7|200|2023-07-04|sci-biology/perlprimer|perlprimer-1.1.21.ebuild|http://perlprimer.sourceforge.net/|https://perlprimer.sourceforge.net/|sci-biology@gentoo.org
7|404|2023-07-04|sci-biology/pileup|pileup-0.6.ebuild|https://www.sanger.ac.uk/resources/software/ssaha2/|https://www.sanger.ac.uk/science/search-tools-and-software|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
7|200|2023-07-04|sci-biology/portrait|portrait-1.1.ebuild|http://bioinformatics.cenargen.embrapa.br/portrait|http://bioinformatics.cenargen.embrapa.br/portrait/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
7|200|2023-07-04|sci-biology/prinseq-lite|prinseq-lite-0.20.4.ebuild|http://prinseq.sourceforge.net/|https://prinseq.sourceforge.net/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
8|200|2023-07-04|sci-biology/pybedtools|pybedtools-0.8.2.ebuild|https://daler.github.io/pybedtools|https://daler.github.io/pybedtools/|mschu.dev@gmail.com:sci-biology@gentoo.org
8|200|2023-07-04|sci-biology/pybedtools|pybedtools-0.9.0.ebuild|https://daler.github.io/pybedtools|https://daler.github.io/pybedtools/|mschu.dev@gmail.com:sci-biology@gentoo.org
8|200|2023-07-04|sci-biology/pyfaidx|pyfaidx-0.5.9.2.ebuild|https://pypi.python.org/pypi/pyfaidx|https://pypi.org/project/pyfaidx/|mschu.dev@gmail.com:sci-biology@gentoo.org
8|200|2023-07-04|sci-biology/pyfaidx|pyfaidx-0.7.2.1.ebuild|https://pypi.python.org/pypi/pyfaidx|https://pypi.org/project/pyfaidx/|mschu.dev@gmail.com:sci-biology@gentoo.org
7|200|2023-07-04|sci-biology/samstat|samstat-1.5.1.ebuild|http://samstat.sourceforge.net|https://sourceforge.net/directory/bio-informatics/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
7|200|2023-07-04|sci-biology/seqtools|seqtools-4.44.1.ebuild|http://www.sanger.ac.uk/resources/software/seqtools|https://www.sanger.ac.uk/tool/seqtools/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
7|200|2023-07-04|sci-biology/sff_dump|sff_dump-1.04.ebuild|http://genome.imb-jena.de/software/roche454ace2caf|https://genome.leibniz-fli.de/software/roche454ace2caf/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
8|200|2023-07-04|sci-biology/stacks|stacks-2.60.ebuild|http://creskolab.uoregon.edu/stacks|http://catchenlab.life.illinois.edu/stacks/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
8|404|2023-07-04|sci-biology/subread|subread-2.0.3.ebuild|http://bioinf.wehi.edu.au/featureCounts/|https://bioinf.wehi.edu.au/featureCounts/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
7|200|2023-07-04|sci-biology/swissknife|swissknife-1.80.ebuild|http://swissknife.sourceforge.net/|https://swissknife.sourceforge.net/|sci-biology@gentoo.org
7|200|2023-07-04|sci-biology/tabixpp|tabixpp-1.1.0.ebuild|https://github.com/ekg/tabixpp|https://github.com/vcflib/tabixpp|sci-biology@gentoo.org
7|200|2023-07-04|sci-biology/trf-bin|trf-bin-4.09.ebuild|http://tandem.bu.edu/trf/trf.html|https://tandem.bu.edu/trf/trf.html|sci-biology@gentoo.org