6|404|app-benchmarks/numbench|numbench-0.2.ebuild|http://soc.dev.gentoo.org/~spiros|https://soc.dev.gentoo.org/~spiros|andyspiros@gmail.com:sci@gentoo.org
6|200|dev-cpp/eigen|eigen-3.2.7-r1.ebuild|http://eigen.tuxfamily.org/|http://eigen.tuxfamily.org/index.php?title=Main_Page|sci@gentoo.org
6|200|dev-cpp/growler-arch|growler-arch-0.3.7.1.ebuild|http://www.nas.nasa.gov/~bgreen/growler/|https://www.nas.nasa.gov/about/staff/index.html|bryan.d.green@nasa.gov
6|200|dev-cpp/growler-core|growler-core-0.3.7.ebuild|http://www.nas.nasa.gov/~bgreen/growler/|https://www.nas.nasa.gov/about/staff/index.html|bryan.d.green@nasa.gov
6|200|dev-cpp/growler|growler-0.3.8.2.ebuild|http://www.nas.nasa.gov/~bgreen/growler/|https://www.nas.nasa.gov/about/staff/index.html|bryan.d.green@nasa.gov
6|200|dev-cpp/growler-link|growler-link-0.3.7.ebuild|http://www.nas.nasa.gov/~bgreen/growler/|https://www.nas.nasa.gov/about/staff/index.html|bryan.d.green@nasa.gov
6|200|dev-cpp/growler-math|growler-math-0.3.4.1.ebuild|http://www.nas.nasa.gov/~bgreen/growler/|https://www.nas.nasa.gov/about/staff/index.html|bryan.d.green@nasa.gov
6|200|dev-cpp/growler-thread|growler-thread-0.3.4.ebuild|http://www.nas.nasa.gov/~bgreen/growler/|https://www.nas.nasa.gov/about/staff/index.html|bryan.d.green@nasa.gov
6|200|dev-cpp/icnc|icnc-9999.ebuild|https://software.intel.com/en-us/articles/intel-concurrent-collections-for-cc|https://software.intel.com/content/www/us/en/develop/home.html|ottxor@gentoo.org
5|404|dev-java/hdf-java|hdf-java-2.9.ebuild|http://www.hdfgroup.org/hdf-java-html/index.html|https://support.hdfgroup.org/products/java/hdf-java-html/index.html|sci@gentoo.org
5|200|dev-java/jgraphx|jgraphx-1.4.1.0.ebuild|http://www.jgraph.com|https://github.com/jgraph|sci@gentoo.org
5|200|dev-java/jlatexmath-fop|jlatexmath-fop-1.0.3.ebuild|http://forge.scilab.org/index.php/p/jlatexmath|http://forge.scilab.org/index.php/login/?_redirect_after=%2Findex.php%2Fp%2Fjlatexmath%2F|sci@gentoo.org
5|200|dev-java/jlatexmath|jlatexmath-1.0.3.ebuild|http://forge.scilab.org/index.php/p/jlatexmath|http://forge.scilab.org/index.php/login/?_redirect_after=%2Findex.php%2Fp%2Fjlatexmath%2F|sci@gentoo.org
7|200|dev-lang/icc|icc-18.0.2.199-r1.ebuild|http://software.intel.com/en-us/articles/intel-composer-xe/|https://software.intel.com/content/www/us/en/develop/home.html|sci@gentoo.org
7|200|dev-lang/ifc|ifc-18.0.2.199-r1.ebuild|http://software.intel.com/en-us/articles/intel-composer-xe/|https://software.intel.com/content/www/us/en/develop/home.html|sci@gentoo.org
6|404|dev-lang/path64|path64-9999.ebuild|http://www.pathscale.com/ekopath-compiler-suite|https://www.pathscale.com/ekopath-compiler-suite|xarthisius@gentoo.org
6|200|dev-lang/pgi|pgi-13.5.ebuild|http://www.pgroup.com/|https://www.pgroup.com/index.htm|gentryx@gmx.de:cluster@gentoo.org
7|200|dev-lang/vtune|vtune-18.0.2.0.551022.ebuild|http://software.intel.com/en-us/articles/intel-vtune-amplifier-xe/|https://software.intel.com/content/www/us/en/develop/tools/vtune-profiler.html|nbigaouette@gmail.com
5|200|dev-libs/asmjit|asmjit-1.0_beta4.ebuild|http://code.google.com/p/asmjit/|https://github.com/asmjit/asmjit|xarthisius@gentoo.org:sci@gentoo.org
5|200|dev-libs/fortrancl|fortrancl-0.1_alpha3.ebuild|http://code.google.com/p/fortrancl/|https://code.google.com/archive/p/fortrancl|xarthisius@gentoo.org:sci@gentoo.org
7|200|dev-libs/intel-common|intel-common-18.0.2.199-r1.ebuild|http://software.intel.com/en-us/articles/intel-compilers/|https://software.intel.com/content/www/us/en/develop/tools/compilers.html|sci@gentoo.org
5|200|dev-libs/libunzip|libunzip-5.52.ebuild|http://www.info-zip.org/|http://infozip.sourceforge.net/|maintainer-needed@gentoo.org
5|404|dev-libs/mxml|mxml-2.9.ebuild|http://www.msweet.org/projects.php?Z3|https://www.msweet.org/projects.php?Z3|cjk34@cam.ac.uk:sci@gentoo.org
5|404|dev-perl/opal-client|opal-client-1.9.2.ebuild|http://nbcr.net/software/opal/|https://meme.nbcr.net/software/opal/|sci@gentoo.org
6|200|dev-python/arrayfire-python|arrayfire-python-3.1.20151111.ebuild|http://www.arrayfire.com|https://arrayfire.com/|marbre@linux.sungazer.de:sci@gentoo.org
5|200|dev-python/astropysics|astropysics-9999.ebuild|http://packages.python.org/Astropysics/|https://pythonhosted.org/Astropysics/|sci-astronomy@gentoo.org
6|200|dev-python/bcbio-gff|bcbio-gff-0.6.4.ebuild|https://pypi.python.org/pypi/bcbio-gff|https://pypi.org/project/bcbio-gff/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
5|200|dev-python/brewer2mpl|brewer2mpl-1.4.1.ebuild|https://github.com/jiffyclub/brewer2mpl|https://github.com/jiffyclub/palettable|marbre@linux.sungazer.de:sci@gentoo.org
5|200|dev-python/coords|coords-0.37.ebuild|https://trac6.assembla.com/astrolib/wiki/|https://trac.assembla.com/astrolib/wiki/|sci-astronomy@gentoo.org
5|200|dev-python/cosmocalc|cosmocalc-0.1.2-r1.ebuild|http://pypi.python.org/pypi/cosmocalc/|https://pypi.org/project/cosmocalc/|sci-astronomy@gentoo.org
6|200|dev-python/matplotlib2tikz|matplotlib2tikz-9999.ebuild|https://github.com/nschloe/matplotlib2tikz|https://github.com/nschloe/tikzplotlib|marbre@linux.sungazer.de:sci@gentoo.org
6|200|dev-python/matplotlib-venn|matplotlib-venn-0.11.ebuild|http://pysurfer.github.com|http://pysurfer.github.io/|sci@gentoo.org
5|200|dev-python/meshpy|meshpy-2013.1.2.ebuild|http://pypi.python.org/pypi/MeshPy|https://pypi.org/project/MeshPy/|sci@gentoo.org
6|200|dev-python/ngslib|ngslib-1.1.19.ebuild|https://pypi.python.org/pypi/ngslib|https://pypi.org/project/ngslib/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
5|404|dev-python/opal-client|opal-client-2.4.1.ebuild|http://www.nbcr.net/data/docs/opal/documentation.html|https://meme.nbcr.net/data/docs/opal/documentation.html|sci-biology@gentoo.org
6|200|dev-python/prov|prov-1.4.0.ebuild|https://pypi.python.org/pypi/prov|https://pypi.org/project/prov/|horea.christ@gmail.com:sci@gentoo.org
5|404|dev-python/psubprocess|psubprocess-0.1.2.ebuild|http://bioinf.comav.upv.es/psubprocess|https://bioinf.comav.upv.es/psubprocess|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
6|200|dev-python/py2bit|py2bit-0.2.1.ebuild|https://github.com/dpryan79/py2bit|https://github.com/deeptools/py2bit|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
6|200|dev-python/pyBigWig|pyBigWig-0.3.4.ebuild|https://github.com/dpryan79/pyBigWig|https://github.com/deeptools/pyBigWig|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
6|200|dev-python/pydotplus|pydotplus-2.0.2.ebuild|http://pydotplus.readthedocs.org/|https://pydotplus.readthedocs.io/|horea.christ@gmail.com:sci@gentoo.org
5|200|dev-python/pyhdf|pyhdf-0.8.3.ebuild|http://pypi.python.org/pypi/pyhdf|https://pypi.org/project/pyhdf/|gorkypl@gmail.com:sci@gentoo.org
5|200|dev-python/pynomo|pynomo-0.2.2.ebuild|http://pynomo.org/|http://pynomo.org/wiki/index.php/Main_Page|witold.pilat@gmail.com
5|200|dev-python/pythoncgns|pythoncgns-2009.10.30.ebuild|http://pypi.python.org/pypi/CGNS/|https://pypi.org/project/CGNS/|sci@gentoo.org
6|200|dev-python/pyvcf|pyvcf-0.6.8.ebuild|https://pypi.python.org/pypi/PyVCF|https://pypi.org/project/PyVCF/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
6|200|dev-python/PyVISA-py|PyVISA-py-0.2.ebuild|https://github.com/hgrecco/pyvisa-py|https://github.com/pyvisa/pyvisa-py|marbre@linux.sungazer.de:sci@gentoo.org
5|200|dev-python/RecSQL|RecSQL-9999.ebuild|http://orbeckst.github.com/RecSQL/|http://orbeckst.github.io/RecSQL/|alexxy@gentoo.org:sci@gentoo.org
6|200|dev-python/shove|shove-0.6.6.ebuild|https://pypi.python.org/pypi/shove|https://pypi.org/project/shove/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
6|200|dev-python/xopen|xopen-0.1.1.ebuild|https://pypi.python.org/pypi/xopen|https://pypi.org/project/xopen/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
6|404|dev-util/amdapp|amdapp-3.0-r1.ebuild|http://developer.amd.com/tools-and-sdks/opencl-zone/amd-accelerated-parallel-processing-app-sdk|https://developer.amd.com/tools-and-sdks/opencl-zone/amd-accelerated-parallel-processing-app-sdk|gentryx@gmx.de:cluster@gentoo.org
6|200|dev-util/bazel|bazel-0.13.0.ebuild|http://bazel.io/|https://bazel.build/|zmedico@gentoo.org
6|200|dev-util/f90cache|f90cache-0.99.ebuild|http://people.irisa.fr/Edouard.Canot/f90cache/|https://perso.univ-rennes1.fr/edouard.canot//f90cache/|ottxor@gentoo.org
6|200|dev-util/nvidia-cuda-gdk|nvidia-cuda-gdk-352.79.ebuild|http://developer.nvidia.com/cuda|https://developer.nvidia.com/cuda-zone|marbre@linux.sungazer.de:sci@gentoo.org
5|200|net-misc/bbscp|bbscp-1.0.6.ebuild|http://www.nas.nasa.gov/Users/Documentation/Networks/BBSCP/bbscp.html|https://www.nas.nasa.gov/hecc/support/kb/|sci@gentoo.org
5|200|perl-core/encoding-warnings|encoding-warnings-0.11.ebuild|http://search.cpan.org/~audreyt/encoding-warnings-0.11/lib/encoding/warnings.pm|https://metacpan.org/pod/release/AUDREYT/encoding-warnings-0.11/lib/encoding/warnings.pm|mail@akhuettel.de
6|200|sci-astronomy/missfits|missfits-9999.ebuild|http://www.astromatic.net/software/missfits/|http://www.astromatic.net/software/missfits|sci-astronomy@gentoo.org
6|200|sci-astronomy/stuff|stuff-9999.ebuild|http://www.astromatic.net/software/stuff/|http://www.astromatic.net/software/stuff|sci-astronomy@gentoo.org
6|200|sci-astronomy/weightwatcher|weightwatcher-9999.ebuild|http://www.astromatic.net/software/weightwatcher/|http://www.astromatic.net/software/weightwatcher|sci-astronomy@gentoo.org
5|404|sci-astronomy/zebra|zebra-1.01.ebuild|http://www.astro.phys.ethz.ch/exgal_ocosm/zebra/index.html|https://ipa.phys.ethz.ch/exgal_ocosm/zebra/index.html|sci-astronomy@gentoo.org
6|200|sci-biology/aghermann|aghermann-1.1.2.ebuild|http://johnhommer.com/academic/code/aghermann|http://johnhommer.com/academic/code/aghermann/|johnhommer@gmail.com:sci-biology@gentoo.org
6|200|sci-biology/ANGLE-bin|ANGLE-bin-20080813-r1.ebuild|http://bioinformatics.cenargen.embrapa.br/portrait/download|http://bioinformatics.cenargen.embrapa.br/portrait/download/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
6|200|sci-biology/angsd|angsd-9999.ebuild|http://www.popgen.dk/angsd|http://www.popgen.dk/angsd/index.php/Main_Page|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
5|404|sci-biology/argo|argo-1.0.24.ebuild|http://www.broadinstitute.org/annotation/argo2|https://www.broadinstitute.org/annotation/argo2|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
5|000|sci-biology/argo|argo-1.0.24.ebuild|http://www.broadinstitute.org/annotation/argo|https://archive.broadinstitute.org/annotation/argo|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
5|404|sci-biology/argo-bin|argo-bin-1.0.31.ebuild|http://www.broadinstitute.org/annotation/argo2|https://www.broadinstitute.org/annotation/argo2|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
5|000|sci-biology/argo-bin|argo-bin-1.0.31.ebuild|http://www.broadinstitute.org/annotation/argo|https://archive.broadinstitute.org/annotation/argo|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
6|404|sci-biology/artemis|artemis-9999.ebuild|http://www.sanger.ac.uk/resources/software/artemis|https://www.sanger.ac.uk/science/search-tools-and-software|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
5|200|sci-biology/autoeditor|autoeditor-1.20.ebuild|http://sourceforge.net/apps/mediawiki/amos/index.php?title=AutoEditor|https://sourceforge.net/projects/amos/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
5|200|sci-biology/bambus|bambus-2.33.ebuild|http://sourceforge.net/apps/mediawiki/amos/index.php?title=AMOS|https://sourceforge.net/projects/amos/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
5|404|sci-biology/bambus|bambus-2.33.ebuild|http://www.tigr.org/software/bambus|https://www.jcvi.org/cms/research/software/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
6|200|sci-biology/blat|blat-36.ebuild|http://www.cse.ucsc.edu/~kent/|https://users.soe.ucsc.edu/~kent/|sci-biology@gentoo.org
5|404|sci-biology/caftools|caftools-2.0.2.ebuild|http://www.sanger.ac.uk/resources/software/caf|https://www.sanger.ac.uk/science/search-tools-and-software|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
7|200|sci-biology/CAT|CAT-1.3.ebuild|http://code.google.com/p/composition-analysis-toolkit|https://code.google.com/archive/p/composition-analysis-toolkit|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
5|200|sci-biology/cd-hit|cd-hit-4.6.5.ebuild|http://weizhongli-lab.org/cd-hit|http://weizhongli-lab.org/cd-hit/|sci-biology@gentoo.org
5|200|sci-biology/cegma|cegma-2.5.ebuild|http://korflab.ucdavis.edu/datasets/cegma|http://korflab.ucdavis.edu/datasets/cegma/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
5|200|sci-biology/cg-cat|cg-cat-20150130.ebuild|http://bibiserv.techfak.uni-bielefeld.de/cgcat|https://bibiserv.cebitec.uni-bielefeld.de/cgcat|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
5|200|sci-biology/cgview-bin|cgview-bin-20131130.ebuild|http://stothard.afns.ualberta.ca/downloads/CCT|http://stothard.afns.ualberta.ca/downloads/CCT/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
5|200|sci-biology/cluster|cluster-1.52a.ebuild|http://bonsai.hgc.jp/~mdehoon/software/cluster|http://bonsai.hgc.jp/~mdehoon/software/cluster/|je_fro@gentoo.org:sci-biology@gentoo.org
6|200|sci-biology/cnrun|cnrun-2.1.0.ebuild|http://johnhommer.com/academic/code/cnrun|http://johnhommer.com/academic/code/cnrun/|johnhommer@gmail.com:sci-biology@gentoo.org
5|200|sci-biology/conifer|conifer-0.2.2.ebuild|http://conifer.sf.net|http://conifer.sourceforge.net/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
5|404|sci-biology/conrad|conrad-1.ebuild|http://www.broadinstitute.org/annotation/conrad|https://www.broadinstitute.org/annotation/conrad|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
5|200|sci-biology/cramtools|cramtools-3.0.ebuild|http://www.ebi.ac.uk/ena/software/cram-toolkit|https://ena-docs.readthedocs.io/en/latest/retrieval/programmatic-access.html#cram-format|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
6|200|sci-biology/cross_genome|cross_genome-20140822.ebuild|http://www.sanger.ac.uk/science/tools/crossgenome|https://www.sanger.ac.uk/tool/crossgenome/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
5|200|sci-biology/dcmstack|dcmstack-9999.ebuild|https://dcmstack.readthedocs.org/en/latest/|https://dcmstack.readthedocs.io/en/latest/|sci@gentoo.org
6|200|sci-biology/deeptools|deeptools-2.5.0.ebuild|https://github.com/fidelram/deepTools|https://github.com/deeptools/deepTools|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
6|200|sci-biology/diamond|diamond-0.9.19.ebuild|http://ab.inf.uni-tuebingen.de/software/diamond|https://www.wsi.uni-tuebingen.de/lehrstuehle/algorithms-in-bioinformatics/software/diamond/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
6|404|sci-biology/dipy|dipy-0.11.0.ebuild|http://nipy.org/dipy|https://nipy.org/dipy|horea.christ@gmail.com:sci@gentoo.org
5|200|sci-biology/EBARDenovo|EBARDenovo-1.2.2.ebuild|http://ebardenovo.sourceforge.net|https://sourceforge.net/projects/ebardenovo/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
5|200|sci-biology/ensembl-tools|ensembl-tools-86.ebuild|http://www.ensembl.org/info/docs/tools/vep/script|http://www.ensembl.org/info/docs/tools/vep/script/index.html|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
5|410|sci-biology/ePCR|ePCR-2.3.12.ebuild|http://www.ncbi.nlm.nih.gov/tools/epcr/|https://www.ncbi.nlm.nih.gov/tools/epcr/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
5|200|sci-biology/est2assembly|est2assembly-1.08.ebuild|http://code.google.com/p/est2assembly/|https://code.google.com/archive/p/est2assembly|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
5|404|sci-biology/ESTate|ESTate-0.5.ebuild|http://www.ebi.ac.uk/~guy/estate|https://www.ebi.ac.uk/~guy/estate|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
5|200|sci-biology/eugene|eugene-4.1d.ebuild|http://www.inra.fr/mia/T/EuGene/|https://www.inrae.fr/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
5|000|sci-biology/eval|eval-2.2.8.ebuild|http://mblab.wustl.edu/software.html|https://mblab.wustl.edu/software.html|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
5|200|sci-biology/exomiser-bin|exomiser-bin-7.2.1.ebuild|http://www.sanger.ac.uk/science/tools/exomiser|https://www.sanger.ac.uk/tool/exomiser/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
5|200|sci-biology/fastdnaml|fastdnaml-1.2.2_p10.ebuild|http://directory.fsf.org/project/fastDNAml/|https://directory.fsf.org/wiki/FastDNAml|sci-biology@gentoo.org
5|404|sci-biology/gap2caf|gap2caf-2.1.0.ebuild|http://www.sanger.ac.uk/resources/software/caf/|https://www.sanger.ac.uk/science/search-tools-and-software|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
5|200|sci-biology/gatk|gatk-3.8.1.ebuild|http://www.broadinstitute.org/gsa/wiki/index.php/The_Genome_Analysis_Toolkit|https://gatk.broadinstitute.org/hc/en-us|sci-biology@gentoo.org
6|200|sci-biology/gemini|gemini-9999.ebuild|http://gemini.readthedocs.org/en/latest|https://gemini.readthedocs.io/en/latest/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
5|000|sci-biology/geneid|geneid-1.4.4.ebuild|http://genome.crg.es/software/geneid|https://genome.crg.cat/software/geneid|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
5|404|sci-biology/generecon|generecon-1.2.1-r1.ebuild|http://www.daimi.au.dk/~mailund/GeneRecon/|https://users-cs.au.dk/~mailund/GeneRecon/|lucas.chiesa@gmail.com:sci-biology@gentoo.org
6|200|sci-biology/germline|germline-1.5.1.ebuild|http://www.cs.columbia.edu/~gusev/germline|http://www.cs.columbia.edu/~gusev/germline/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
5|000|sci-biology/gfftools|gfftools-0.98d.ebuild|http://genome.crg.es/software/gfftools/GFF2PS.html|https://genome.crg.cat/software/gfftools/GFF2PS.html|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
5|200|sci-biology/hexamer|hexamer-19990330.ebuild|http://www.sanger.ac.uk/resources/software|https://www.sanger.ac.uk/science/tools/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
5|200|sci-biology/hydra-sv|hydra-sv-0.5.3.ebuild|http://code.google.com/p/hydra-sv/|https://code.google.com/archive/p/hydra-sv|sci@gentoo.org
5|200|sci-biology/igv|igv-2.3.47.ebuild|http://www.broadinstitute.org/igv/|http://software.broadinstitute.org/software/igv/|sci-biology@gentoo.org
5|200|sci-biology/IMAGE|IMAGE-2.4.1.ebuild|https://sourceforge.net/apps/mediawiki/image2|https://sourceforge.net/projects/image2/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
6|200|sci-biology/imagej|imagej-1.51k.ebuild|http://rsb.info.nih.gov/ij/|https://imagej.nih.gov/ij/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
7|200|sci-biology/irsabi_bidsdata|irsabi_bidsdata-1.0.ebuild|http://www.aic-fmi.ethz.ch/|https://aic-fmi.ethz.ch/|horea.christ@gmail.com:sci@gentoo.org
5|200|sci-biology/jannovar-bin|jannovar-bin-0.17.ebuild|http://compbio.charite.de|http://charite.github.io/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
7|200|sci-biology/KaKs_Calculator|KaKs_Calculator-1.2.ebuild|https://code.google.com/p/kaks-calculator|https://code.google.com/archive/p/kaks-calculator|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
5|200|sci-biology/khmer|khmer-0.8.ebuild|https://github.com/ged-lab/khmer|https://github.com/dib-lab/khmer|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
5|200|sci-biology/kraken|kraken-1.0.ebuild|http://genomebiology.com/2014/15/3/R46|https://genomebiology.biomedcentral.com/articles/10.1186/gb-2014-15-3-r46|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
6|200|sci-biology/manatee-igs|manatee-igs-2.23.1.ebuild|http://manatee.sourceforge.net/igs|http://manatee.sourceforge.net/igs/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
5|200|sci-biology/merlin|merlin-1.1.2.ebuild|http://www.sph.umich.edu/csg/abecasis/Merlin/|http://csg.sph.umich.edu/abecasis/Merlin/|sci-biology@gentoo.org
5|200|sci-biology/MeV|MeV-4.8.1.ebuild|http://mev-tm4.sourceforge.net|https://sourceforge.net/projects/mev-tm4/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
5|404|sci-biology/MochiView|MochiView-1.45.ebuild|http://johnsonlab.ucsf.edu/mochi.html|http://www.johnsonlab.ucsf.edu/mochi.html|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
5|200|sci-biology/mothur|mothur-1.36.1.ebuild|http://www.mothur.org/|http://mothur.org/|sci-biology@gentoo.org
7|200|sci-biology/mouse-brain-atlases|mouse-brain-atlases-0.3.ebuild|https://github.com/IBT-FMI/mouse-brain-atlases|https://github.com/IBT-FMI/mouse-brain-atlases_generator|horea.christ@gmail.com:sci@gentoo.org
6|200|sci-biology/msautil|msautil-1.1-r1.ebuild|http://bioresearch.byu.edu/msa|http://bioresearch.byu.edu/msa/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
7|400|sci-biology/ncbi-blast+|ncbi-blast+-2.2.30.ebuild|http://www.ncbi.nlm.nih.gov/books/bv.fcgi?rid=toolkit|https://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/book/redirector.cgi?url=%2Fbooks%2Fbv.fcgi%3Frid%3Dtoolkit|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
5|400|sci-biology/ncbi-tools++|ncbi-tools++-12.0.0.ebuild|http://www.ncbi.nlm.nih.gov/books/bv.fcgi?rid=toolkit|https://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/book/redirector.cgi?url=%2Fbooks%2Fbv.fcgi%3Frid%3Dtoolkit|sci-biology@gentoo.org
6|404|sci-biology/ngs_backbone|ngs_backbone-1.4.0.ebuild|http://bioinf.comav.upv.es/ngs_backbone/index.html|https://bioinf.comav.upv.es/ngs_backbone/index.html|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
5|200|sci-biology/nwalign|nwalign-0.3.1.ebuild|https://pypi.python.org/pypi/nwalign|https://pypi.org/project/nwalign/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
5|200|sci-biology/OBO-Edit|OBO-Edit-2.1.0.ebuild|http://www.oboedit.org/|http://oboedit.org/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
6|200|sci-biology/ParaAT|ParaAT-1.0.ebuild|http://cbb.big.ac.cn/software|http://cbb.big.ac.cn/Software|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
6|200|sci-biology/ParaAT|ParaAT-1.0.ebuild|https://code.google.com/p/paraat|https://code.google.com/archive/p/paraat|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
5|404|sci-biology/phusion2|phusion2-3.0.ebuild|http://www.sanger.ac.uk/resources/software/phusion/|https://www.sanger.ac.uk/science/search-tools-and-software|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
5|404|sci-biology/phusion|phusion-2.1c.ebuild|http://www.sanger.ac.uk/resources/software/phusion/|https://www.sanger.ac.uk/science/search-tools-and-software|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
5|404|sci-biology/pileup|pileup-0.6.ebuild|http://www.sanger.ac.uk/resources/software/ssaha2/|https://www.sanger.ac.uk/science/search-tools-and-software|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
5|200|sci-biology/portrait|portrait-1.1.ebuild|http://bioinformatics.cenargen.embrapa.br/portrait|http://bioinformatics.cenargen.embrapa.br/portrait/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
5|200|sci-biology/prot4EST|prot4EST-3.1b.ebuild|http://www.biomedcentral.com/1471-2105/5/187|https://bmcbioinformatics.biomedcentral.com/articles/10.1186/1471-2105-5-187|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
5|200|sci-biology/pyfaidx|pyfaidx-0.4.8.1.ebuild|https://pypi.python.org/pypi/pyfaidx|https://pypi.org/project/pyfaidx/|mschu.dev@gmail.com:sci-biology@gentoo.org
6|200|sci-biology/pysamstats|pysamstats-0.24.2.ebuild|https://pypi.python.org/pypi/pysamstats|https://pypi.org/project/pysamstats/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
5|404|sci-biology/quicktree|quicktree-1.1-r1.ebuild|http://www.sanger.ac.uk/Software/analysis/quicktree/|https://www.sanger.ac.uk/science/search-tools-and-software|sci-biology@gentoo.org
6|200|sci-biology/reapr|reapr-1.0.18.ebuild|http://www.sanger.ac.uk/science/tools/reapr|https://www.sanger.ac.uk/tool/reapr/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
6|200|sci-biology/Scaffolder-evaluation|Scaffolder-evaluation-9999.ebuild|http://genomebiology.com/2014/15/3/R42|https://genomebiology.biomedcentral.com/articles/10.1186/gb-2014-15-3-r42|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
5|200|sci-biology/screed|screed-0.9.ebuild|http://github.com/ged-lab/screed/|https://github.com/dib-lab/screed|sci-biology@gentoo.org
5|200|sci-biology/screed|screed-0.9.ebuild|https://pypi.python.org/pypi/screed|https://pypi.org/project/screed/|sci-biology@gentoo.org
6|200|sci-biology/seqtools|seqtools-4.44.1.ebuild|http://www.sanger.ac.uk/resources/software/seqtools|https://www.sanger.ac.uk/tool/seqtools/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
5|000|sci-biology/sgp2|sgp2-1.1.ebuild|http://genome.crg.es/software/sgp2/|https://genome.crg.cat/software/sgp2/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
5|404|sci-biology/smalt-bin|smalt-bin-0.7.4.ebuild|http://www.sanger.ac.uk/resources/software/smalt/|https://www.sanger.ac.uk/science/search-tools-and-software|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
5|404|sci-biology/smalt|smalt-0.7.6.ebuild|http://www.sanger.ac.uk/resources/software/smalt/|https://www.sanger.ac.uk/science/search-tools-and-software|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
5|200|sci-biology/snphylo|snphylo-20140701.ebuild|http://chibba.pgml.uga.edu/snphylo|http://chibba.pgml.uga.edu/snphylo/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
5|404|sci-biology/ssaha2-bin|ssaha2-bin-2.5.5.ebuild|http://www.sanger.ac.uk/resources/software/ssaha2|https://www.sanger.ac.uk/science/search-tools-and-software|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
5|200|sci-biology/tagdust|tagdust-20101028.ebuild|http://genome.gsc.riken.jp/osc/english/dataresource|http://genome.gsc.riken.jp/osc/english/dataresource/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
5|000|sci-biology/twinscan|twinscan-4.1.2-r1.ebuild|http://mblab.wustl.edu/software/twinscan|https://mblab.wustl.edu/software/twinscan|sci-biology@gentoo.org
5|200|sci-biology/ugene|ugene-1.20.0.ebuild|http://ugene.unipro.ru|http://ugene.net/|alexxy@gentoo.org:sci@gentoo.org
5|200|sci-biology/wcd|wcd-0.6.3.ebuild|http://code.google.com/p/wcdest/|https://code.google.com/archive/p/wcdest|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
7|200|sci-biology/zmap|zmap-2.12.0.ebuild|http://www.sanger.ac.uk/science/tools/zmap|https://www.sanger.ac.uk/tool/zmap/|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
5|404|sci-chemistry/chooch|chooch-5.0.2-r1.ebuild|http://www.gwyndafevans.co.uk/id2.html|http://gwyndafevans.co.uk/id2.html|sci-chemistry@gentoo.org
5|200|sci-chemistry/concoord|concoord-2.1.2.ebuild|http://www.mpibpc.mpg.de/groups/de_groot/concoord/concoord.html|https://www3.mpibpc.mpg.de/groups/de_groot/concoord/concoord.html|jlec@gentoo.org:sci-chemistry@gentoo.org
6|200|sci-chemistry/coot|coot-9999.ebuild|https://www2.mrc-lmb.cam.ac.uk/Personal/pemsley/coot/|https://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/|jlec@gentoo.org:sci-chemistry@gentoo.org
5|200|sci-chemistry/cpmgfit|cpmgfit-1.43.ebuild|http://biochemistry.hs.columbia.edu/labs/palmer/software/cpmgfit.html|https://www.biochem.cumc.columbia.edu/research-labs/palmer-lab|sci-chemistry@gentoo.org
5|200|sci-chemistry/freeon|freeon-9999.ebuild|http://www.freeon.org|https://freeon.org/|nicolasbock@gentoo.org:sci-chemistry@gentoo.org
5|200|sci-chemistry/GromacsWrapper|GromacsWrapper-9999.ebuild|http://orbeckst.github.com/GromacsWrapper/|http://orbeckst.github.io/GromacsWrapper/|alexxy@gentoo.org:sci-chemistry@gentoo.org
5|404|sci-chemistry/mddnmr|mddnmr-2.4-r1.ebuild|http://www.nmr.gu.se/~mdd/|https://www.gu.se/nmr/~mdd/|sci-chemistry@gentoo.org
5|200|sci-chemistry/mdsctk|mdsctk-1.2.0.ebuild|https://github.com/douradopalmares/mdsctk|https://github.com/jlphillipsphd/mdsctk|ottxor@gentoo.org:sci-chemistry@gentoo.org
5|200|sci-chemistry/modelfree|modelfree-4.20.ebuild|http://www.palmer.hs.columbia.edu/software/modelfree.html|https://www.biochem.cumc.columbia.edu/research-labs/palmer-lab|jlec@gentoo.org:sci-chemistry@gentoo.org
5|200|sci-chemistry/module2|module2-0_pre20140717.ebuild|http://www.ibs.fr/science-213/scientific-output/software/module/?lang=en|https://www.ibs.fr/research/scientific-output/software/module/?lang=en|jlec@gentoo.org:sci-chemistry@gentoo.org
5|200|sci-chemistry/openbabel-java|openbabel-java-9999.ebuild|http://openbabel.sourceforge.net/|http://openbabel.org/wiki/Main_Page|sci-chemistry@gentoo.org
5|200|sci-chemistry/openbabel|openbabel-9999.ebuild|http://openbabel.sourceforge.net/|http://openbabel.org/wiki/Main_Page|sci-chemistry@gentoo.org
5|200|sci-chemistry/openbabel-perl|openbabel-perl-9999.ebuild|http://openbabel.sourceforge.net/|http://openbabel.org/wiki/Main_Page|sci-chemistry@gentoo.org
5|200|sci-chemistry/openbabel-python|openbabel-python-9999.ebuild|http://openbabel.sourceforge.net/|http://openbabel.org/wiki/Main_Page|sci-chemistry@gentoo.org
5|303|sci-chemistry/panav|panav-0.20130730.ebuild|http://link.springer.com/article/10.1007%2Fs10858-010-9407-y/fulltext.html|https://link.springer.com/article/10.1007/s10858-010-9407-y?error=cookies_not_supported&code=a5ba80e4-6f5c-4b0d-b92b-fc19d9c3198a|jlec@gentoo.org:sci-chemistry@gentoo.org
5|200|sci-chemistry/rosetta-tools|rosetta-tools-3.0.ebuild|http://dylans-biotools.sourceforge.net/|https://sourceforge.net/projects/dylans-biotools/|sci-chemistry@gentoo.org
5|200|sci-chemistry/smmp|smmp-3.0.5.ebuild|http://smmp.berlios.de/|http://18382.whserv.de/admin/index.php|sci-chemistry@gentoo.org
5|404|sci-libs/amdlibm|amdlibm-3.1.ebuild|http://developer.amd.com/tools/cpu-development/libm/|https://developer.amd.com/tools/cpu-development/libm/|sci@gentoo.org
6|200|sci-libs/arrayfire|arrayfire-3.1.3-r1.ebuild|http://www.arrayfire.com/|https://arrayfire.com/|marbre@linux.sungazer.de:sci@gentoo.org
5|404|sci-libs/bigdft-abi|bigdft-abi-1.0.4-r3.ebuild|http://www.abinit.org/downloads/plug-in-sources|https://www.abinit.org/downloads/plug-in-sources|sci-physics@gentoo.org
5|200|sci-libs/cgnstools|cgnstools-2.5.4-r1.ebuild|http://www.cgns.org/|http://cgns.github.io/|sci@gentoo.org
5|200|sci-libs/elmer-eio|elmer-eio-6.0_p4651.ebuild|http://www.csc.fi/english/pages/elmer|https://www.csc.fi/web/elmer|sci@gentoo.org
5|200|sci-libs/elmer-hutiter|elmer-hutiter-6.0_p4651.ebuild|http://www.csc.fi/english/pages/elmer|https://www.csc.fi/web/elmer|sci@gentoo.org
5|404|sci-libs/etsf_io|etsf_io-1.0.3-r2.ebuild|http://www.etsf.eu/resources/software/libraries_and_tools/|https://www.etsf.eu/resources/software/libraries_and_tools/|sci@gentoo.org
5|404|sci-libs/factory|factory-3.1.1-r2.ebuild|http://www.mathematik.uni-kl.de/pub/Math/Singular/Factory|https://www.mathematik.uni-kl.de/pub/Math/Singular/Factory|tom111@gmx.de:sci@gentoo.org
7|200|sci-libs/ipp|ipp-18.0.2.199.ebuild|http://software.intel.com/en-us/articles/intel-ipp/|https://software.intel.com/content/www/us/en/develop/tools/integrated-performance-primitives.html|sci@gentoo.org
7|200|sci-libs/itk|itk-5.0.1.ebuild|http://www.itk.org|https://itk.org/|maintainer-wanted@gentoo.org:sci-biology@gentoo.org
5|200|sci-libs/k3match|k3match-1.1.ebuild|http://pschella.github.com/k3match/|http://pschella.github.io/k3match/|AstroFloyd@gmail.com:sci@gentoo.org
5|200|sci-libs/libspatialindex|libspatialindex-1.8.5.ebuild|http://libspatialindex.github.com/|https://libspatialindex.org/en/latest/|hasufell@posteo.de:sci-geosciences@gentoo.org
5|200|sci-libs/lwpr|lwpr-1.2.5.ebuild|http://www.ipab.inf.ed.ac.uk/slmc/software/lwpr/|http://web.inf.ed.ac.uk/slmc|sci-mathematics@gentoo.org
7|200|sci-libs/mkl|mkl-18.0.2.199.ebuild|http://software.intel.com/en-us/articles/intel-mkl/|https://software.intel.com/content/www/us/en/develop/tools/math-kernel-library.html|sci@gentoo.org
5|200|sci-libs/modglue|modglue-1.19.ebuild|http://cadabra.phi-sci.com|https://cadabra.science/|sci@gentoo.org
5|200|sci-libs/ni-visa|ni-visa-0.0.1.ebuild|http://www.ni.com/|https://www.ni.com/en-us.html|mail@akhuettel.de
7|200|sci-libs/pybids|pybids-0.5.0.ebuild|https://github.com/INCF/pybids|https://github.com/bids-standard/pybids|horea.christ@gmail.com:sci@gentoo.org
5|200|sci-libs/symengine|symengine-0.1.0.ebuild|https://github.com/sympy/symengine|https://github.com/symengine/symengine|mschu.dev@gmail.com:sci-mathematics@gentoo.org
5|200|sci-mathematics/dsfmt|dsfmt-2.2.ebuild|http://www.math.sci.hiroshima-u.ac.jp/~m-mat/MT/SFMT|http://www.math.sci.hiroshima-u.ac.jp/~m-mat@math.sci.hiroshima-u.ac.jp/MT/SFMT/|sci-mathematics@gentoo.org
5|200|sci-mathematics/freefem++|freefem++-3.8.ebuild|http://www.freefem.org/ff++/|https://freefem.org/ff++/|sci-mathematics@gentoo.org
5|200|sci-mathematics/Macaulay2|Macaulay2-9999.ebuild|http://www.math.uiuc.edu/Macaulay2/|https://faculty.math.illinois.edu/Macaulay2/|tom111@gmx.de:sci-mathematics@gentoo.org
5|200|sci-mathematics/z3|z3-4.3.1.ebuild|http://z3.codeplex.com/|https://archive.codeplex.com/?p=z3|sci@gentoo.org
5|200|sci-misc/foma|foma-0.9.14_alpha.ebuild|http://foma.sf.net/|http://foma.sourceforge.net/dokuwiki/doku.php|flammie@gentoo.org
5|200|sci-misc/foma|foma-0.9.16_alpha.ebuild|http://code.google.com/p/foma/|https://code.google.com/archive/p/foma|flammie@gentoo.org
5|200|sci-misc/jwnl|jwnl-1.3_rc3.ebuild|http://jwordnet.sf.net|https://sourceforge.net/projects/jwordnet/|flammie@gentoo.org
5|200|sci-misc/opennlp-maxent|opennlp-maxent-2.4.0.ebuild|http://maxent.sf.net/|http://maxent.sourceforge.net/|flammie@gentoo.org
5|200|sci-misc/sfst|sfst-1.4.2.ebuild|http://www.ims.uni-stuttgart.de/projekte/gramotron/SOFTWARE/SFST.html|https://www.cis.uni-muenchen.de/~schmid/tools/SFST/|flammie@gentoo.org
5|200|sci-physics/atompaw|atompaw-4.0.0.14.ebuild|http://www.wfu.edu/~natalie/papers/pwpaw/man.html|http://users.wfu.edu/natalie/papers/pwpaw/man.html|sci@gentoo.org:sci-physics@gentoo.org:Hloupy.Honza@centrum.cz
5|200|sci-physics/bigdft|bigdft-1.7.1.ebuild|http://bigdft.org/|http://bigdft.org/Wiki/index.php?title=BigDFT_website|sci-physics@gentoo.org
5|200|sci-physics/geant-vmc|geant-vmc-3.1.15a.ebuild|http://root.cern.ch/root/vmc/VirtualMC.html|https://github.com/vmc-project/vmc|sci-physics@gentoo.org
6|200|sys-cluster/blcr|blcr-0.8.5.ebuild|https://ftg.lbl.gov/projects/CheckpointRestart|https://crd.lbl.gov/departments/computer-science/class/research/past-projects/BLCR/|cluster@gentoo.org
5|404|sys-cluster/empi|empi-0.10.ebuild|http://dev.gentoo.org/~jsbronder/empi.xml|https://dev.gentoo.org/~jsbronder/empi.xml|jsbronder@gentoo.org:cluster@gentoo.org
5|200|sys-cluster/htcondor|htcondor-8.3.2.ebuild|http://htcondorproject.org/|https://research.cs.wisc.edu/htcondor/|cjk34@cam.ac.uk:cluster@gentoo.org
6|200|sys-cluster/mpe2|mpe2-1.3.0.ebuild|http://www-unix.mcs.anl.gov/perfvis/download/index.htm|https://www.mcs.anl.gov/research/projects/perfvis/download/index.htm|cluster@gentoo.org
5|200|sys-cluster/mpich2|mpich2-1.5.ebuild|http://www.mcs.anl.gov/research/projects/mpich2/index.php|https://www.mpich.org/|jsbronder@gentoo.org:balaji@mcs.anl.gov:cluster@gentoo.org
6|200|sys-devel/gdebugger|gdebugger-6.2.438.ebuild|http://developer.amd.com/tools/gDEBugger/Pages/default.aspx|https://developer.amd.com/amd-aocl/archives/|nbigaouette@gmail.com:sci@gentoo.org