6|app-doc/blas-docs|blas-docs-3.3|http://dev.gentoo.org/~bicatali/lapack-man-3.3.tar.gz|sci@gentoo.org|387981
6|app-doc/lapack-docs|lapack-docs-3.3-r1|http://dev.gentoo.org/~bicatali/lapack-man-3.3.tar.gz|sci@gentoo.org|387981
6|app-doc/scalapack-docs|scalapack-docs-2.0|http://dev.gentoo.org/~bicatali/distfiles/scalapack-docs-2.0.tar.bz2|sci@gentoo.org
6|dev-cpp/eigen|eigen-3.2.7-r1|https://bitbucket.org/eigen/eigen/commits/1d71b1341c03a7c485289be2c8bd906a259c0487/raw/|sci@gentoo.org|653082:743172:712808:738380:754327
6|dev-cpp/eigen|eigen-3.2.7-r1|https://bitbucket.org/eigen/eigen/get/3.2.7.tar.bz2|sci@gentoo.org|653082:743172:712808:738380:754327
6|dev-cpp/eigen|eigen-3.2.8-r2|https://bitbucket.org/eigen/eigen/commits/1d71b1341c03a7c485289be2c8bd906a259c0487/raw/|sci@gentoo.org|653082:743172:712808:738380:754327
6|dev-cpp/eigen|eigen-3.2.8-r2|https://bitbucket.org/eigen/eigen/get/3.2.8.tar.bz2|sci@gentoo.org|653082:743172:712808:738380:754327
5|dev-java/gluegen|gluegen-1_p20080421|http://dev.gentoo.org/~ali_bush/distfiles/gluegen-20080421.tar.bz2|sci@gentoo.org
5|dev-libs/asmjit|asmjit-1.0_beta4|http://asmjit.googlecode.com/files/AsmJit-1.0-beta4.zip|xarthisius@gentoo.org:sci@gentoo.org
5|dev-libs/fortrancl|fortrancl-0.1_alpha3|http://fortrancl.googlecode.com/files/fortrancl-0.1alpha3.tar.gz|xarthisius@gentoo.org:sci@gentoo.org
5|dev-libs/mxml|mxml-2.9|http://www.msweet.org/files/project3/mxml-2.9.tar.gz|cjk34@cam.ac.uk:sci@gentoo.org
5|dev-libs/simclist|simclist-1.6|http://mij.oltrelinux.com/devel/simclist/simclist-1.6.tar.bz2|sci@gentoo.org
5|dev-ml/lacaml|lacaml-7.0.3|https://bitbucket.org/mmottl/lacaml/downloads/lacaml-7.0.3.tar.gz|sci@gentoo.org|388899:539916
5|dev-python/Forthon|Forthon-0.8.13|http://hifweb.lbl.gov/Forthon/Forthon-0.8.13.tgz|xarthisius@gentoo.org
5|dev-python/psubprocess|psubprocess-0.1.2|http://bioinf.comav.upv.es/_downloads/psubprocess-0.1.2.tar.gz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
6|dev-util/f90cache|f90cache-0.99|http://people.irisa.fr/Edouard.Canot/f90cache/f90cache-0.99.tar.bz2|ottxor@gentoo.org
6|dev-util/VampirTrace|VampirTrace-5.14.3|http://wwwpub.zih.tu-dresden.de/%7Emlieber/dcount/dcount.php?package=vampirtrace&get=VampirTrace-5.14.3.tar.gz|gentryx@gmx.de:cluster@gentoo.org
6|net-ftp/bbftp-client|bbftp-client-3.2.1|http://doc.in2p3.fr/bbftp/dist/bbftp-client-3.2.1.tar.gz|sci@gentoo.org|231952
6|net-ftp/bbftp-server|bbftp-server-3.2.1|http://doc.in2p3.fr/bbftp/dist/bbftp-server-3.2.1.tar.gz|sci@gentoo.org
6|net-misc/cernbox-client|cernbox-client-2.3.2|https://cernbox.cern.ch/cernbox/doc/Linux/repo/CentOS_7/src/cernbox-client-2.2.4-1.1.src.rpm|sci-physics@gentoo.org
5|sci-astronomy/bpz|bpz-1.99.3|http://www.its.caltech.edu/~coe/BPZ//bpz-1.99.3.tar.gz|sci-astronomy@gentoo.org
5|sci-astronomy/casapy-bin|casapy-bin-4.2.2.30986_p1|https://svn.cv.nrao.edu/casa/linux_distro/casapy-42.2.30986-1-64b.tar.gz|sci-astronomy@gentoo.org
5|sci-astronomy/starlink-bin|starlink-bin-20130413|http://ftp.jach.hawaii.edu/starlink/hikianalia/starlink-hikianalia-Linux-32bit.tar.gz|sci-astronomy@gentoo.org
5|sci-astronomy/starlink-bin|starlink-bin-20130413|http://ftp.jach.hawaii.edu/starlink/hikianalia/starlink-hikianalia-Linux-64bit.tar.gz|sci-astronomy@gentoo.org
5|sci-astronomy/zebra|zebra-1.01|http://www.astro.phys.ethz.ch/exgal_ocosm/zebra/tar/zebra-1.01.tar.gz|sci-astronomy@gentoo.org
7|sci-biology/ABI-expression-data|ABI-expression-data-0.1|http://chymera.eu/distfiles/ABI-expression-data-0.1.tar.xz|tina.seg@bluewin.ch:sci@gentoo.org
6|sci-biology/aghermann|aghermann-1.1.2|http://alfinston.dlinkddns.com/johnhommer.com/code/aghermann/source/aghermann-1.1.2.tar.xz|johnhommer@gmail.com:sci-biology@gentoo.org
6|sci-biology/ampliconnoise|ampliconnoise-1.27|http://ampliconnoise.googlecode.com/files/AmpliconNoiseV1.27.tar.gz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
6|sci-biology/ampliconnoise|ampliconnoise-1.27|http://ampliconnoise.googlecode.com/files/DiversityEstimates.tar.gz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
6|sci-biology/ampliconnoise|ampliconnoise-1.27|http://ampliconnoise.googlecode.com/files/TutorialV1.22.tar.gz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
5|sci-biology/argo|argo-1.0.24|http://www.broadinstitute.org/annotation/argo/src/workspace-2008-03-11.tgz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org|755284:755287
5|sci-biology/argo-bin|argo-bin-1.0.31|http://www.broadinstitute.org/annotation/argo/argo.jar|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org|755287
5|sci-biology/argo-bin|argo-bin-2.0.3|http://www.broadinstitute.org/annotation/argo2/releases/argo2.jar|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org|755287
5|sci-biology/bambino|bambino-1.02|https://cgwb.nci.nih.gov/cgi-bin/bambino?download_bambino_jar=bundle|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org|755113
5|sci-biology/bambino|bambino-1.02|https://cgwb.nci.nih.gov/cgi-bin/bambino?download_bambino_jar=core|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org|755113
5|sci-biology/bambino|bambino-1.06|https://cgwb.nci.nih.gov/cgi-bin/bambino?download_bambino_jar=bundle|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org|755113
5|sci-biology/bambino|bambino-1.06|https://cgwb.nci.nih.gov/cgi-bin/bambino?download_bambino_jar=core|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org|755113
5|sci-biology/bambus|bambus-2.33|http://sourceforge.net/projects/amos/files/bambus/2.33/bambus-2.33.tar.gz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
5|sci-biology/BBmap|BBmap-35.92|http://sourceforge.net/projects/bbmap/files/BBMap_35.92.tar.gz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
5|sci-biology/BBmap|BBmap-36.02|http://sourceforge.net/projects/bbmap/files/BBMap_36.02.tar.gz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
5|sci-biology/bfast|bfast-0.7.0_alpha|https://sourceforge.net/projects/bfast/files/bfast/0.7.0/bfast-0.7.0a.tar.gz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org|625490
5|sci-biology/blue|blue-1.1.2|http://www.bioinformatics.csiro.au/public/files/Changes_for_Blue_1.1.3.pdf|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
5|sci-biology/blue|blue-1.1.2|http://www.bioinformatics.csiro.au/public/files/Correcting_reads_with_Blue.pdf|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
5|sci-biology/blue|blue-1.1.2|http://www.bioinformatics.csiro.au/public/files/Linux-1.1.2.tar.gz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
5|sci-biology/blue|blue-1.1.3|http://www.bioinformatics.csiro.au/public/files/Changes_for_Blue_1.1.3.pdf|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
5|sci-biology/blue|blue-1.1.3|http://www.bioinformatics.csiro.au/public/files/Correcting_reads_with_Blue.pdf|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
5|sci-biology/blue|blue-1.1.3|http://www.bioinformatics.csiro.au/public/files/Linux-1.1.3.tar.gz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
5|sci-biology/cd-hit-auxtools|cd-hit-auxtools-0.5|http://cdhit.googlecode.com/files/cd-hit-auxtools-v0.5-2012-03-07.tgz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org|755290
5|sci-biology/cd-hit-auxtools|cd-hit-auxtools-0.5|http://weizhong-lab.ucsd.edu/cd-hit/wiki/doku.php?id=cd-hit-auxtools-manual|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org|755290
5|sci-biology/cgview-bin|cgview-bin-20131130|http://www.ualberta.ca/~stothard/downloads/cgview_comparison_tool.zip|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
5|sci-biology/clover|clover-2011.10.24|http://zlab.bu.edu/clover/jaspar2009core|maintainer-wanted@gentoo.org:sci-biology@gentoo.org|142269:755089
5|sci-biology/clover|clover-2011.10.24|http://zlab.bu.edu/~mfrith/downloads/clover-2011-10-24.tar.gz|maintainer-wanted@gentoo.org:sci-biology@gentoo.org|142269:755089
5|sci-biology/clview|clview-0.1|http://sourceforge.net/projects/clview/files/source%20code/clview_src.tar.gz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
6|sci-biology/cnrun|cnrun-2.1.0|http://alfinston.dlinkddns.com/johnhommer.com/code/cnrun/source/cnrun-2.1.0.tar.xz|johnhommer@gmail.com:sci-biology@gentoo.org
5|sci-biology/conrad|conrad-1|http://www.broadinstitute.org/annotation/conrad/conradSrcV1.zip|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
6|sci-biology/cortex_var|cortex_var-1.0.5.21|http://sourceforge.net/projects/cortexassembler/files/cortex_var/latest/CORTEX_release_v1.0.5.21.tgz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
6|sci-biology/cross_genome|cross_genome-20140822|https://sourceforge.net/projects/phusion2/files/cross_genome/cross_genome.tar.gz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org|755296
5|sci-biology/dawg|dawg-1.1.2|http://scit.us/projects/files/dawg/Releases/dawg-1.1.2-release.tar.gz|sci-biology@gentoo.org|230649:755521
7|sci-biology/drlfom_bidsdata|drlfom_bidsdata-1.0|http://chymera.eu/distfiles/drlfom_bidsdata-1.0.tar.xz|chr@chymera.eu:sci@gentoo.org
5|sci-biology/est2assembly|est2assembly-1.08|http://est2assembly.googlecode.com/files/est2assembly_1.08.tar.gz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
5|sci-biology/ESTate|ESTate-0.5|http://www.ebi.ac.uk/~guy/estate/estate.tar.gz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org|755749
5|sci-biology/ESTate|ESTate-0.5|http://www.ebi.ac.uk/~guy/estate/thesis.ps.gz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org|755749
5|sci-biology/eugene|eugene-4.1d|https://mulcyber.toulouse.inra.fr/frs/download.php/1359/eugene-4.1d.tar.gz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org|741184
5|sci-biology/ffindex|ffindex-0.9.9.6|http://www.splashground.de/~andy/programs/FFindex/ffindex-0.9.9.6.tar.gz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org|755116
5|sci-biology/fgap-bin|fgap-bin-1.8.1|https://sourceforge.net/projects/fgap/files/FGAP_1_8_1_LINUX64b.tar.gz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
5|sci-biology/fgap|fgap-1.8.1|https://sourceforge.net/projects/fgap/files/fgap.m|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
5|sci-biology/generecon|generecon-1.2.1-r1|http://www.daimi.au.dk/~mailund/GeneRecon/download/generecon-1.2.1.tar.gz|lucas.chiesa@gmail.com:sci-biology@gentoo.org|128514:755527
6|sci-biology/germline|germline-1.5.2|http://www.cs.columbia.edu/~gusev/germline/germline-1-5-2.tar.gz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org|755305
5|sci-biology/hydra-sv|hydra-sv-0.5.3|http://hydra-sv.googlecode.com/files/Hydra.v0.5.3.tar.gz|sci@gentoo.org|755314
7|sci-biology/irsabi_bidsdata|irsabi_bidsdata-1.0|http://chymera.eu/distfiles/irsabi_bidsdata-1.0.tar.xz|horea.christ@gmail.com:sci@gentoo.org
7|sci-biology/irsabi_bidsdata|irsabi_bidsdata-1.2|http://chymera.eu/distfiles/irsabi_bidsdata-1.2.tar.xz|horea.christ@gmail.com:sci@gentoo.org
5|sci-biology/jigsaw|jigsaw-3.2.10|http://cbcb.umd.edu/software/jigsaw/jigsaw-3.2.10.tar.gz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
5|sci-biology/jtreeview-bin|jtreeview-bin-1.1.6.4|http://sourceforge.net/projects/jtreeview/files/helper-scripts/0.0.2/helper-scripts-0.0.2.tar.gz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
5|sci-biology/jtreeview-bin|jtreeview-bin-1.1.6.4|http://sourceforge.net/projects/jtreeview/files/jtreeview/1.1.6r4/TreeView-1.1.6r4-bin.tar.gz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
5|sci-biology/jtreeview|jtreeview-1.1.6.4|http://sourceforge.net/projects/jtreeview/files/helper-scripts/0.0.2/helper-scripts-0.0.2.tar.gz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
5|sci-biology/jtreeview|jtreeview-1.1.6.4|http://sourceforge.net/projects/jtreeview/files/jtreeview/1.1.6r4/TreeView-1.1.6r4-src.tar.gz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
5|sci-biology/lucy|lucy-1.20|http://sourceforge.net/projects/lucy/files/lucy/lucy%201.20/lucy1.20.tar.gz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
6|sci-biology/MagicViewer|MagicViewer-1.2.1|http://59.79.168.90/soft/MagicViewer_1.2.1_x86_32_linux.tar.gz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
6|sci-biology/MagicViewer|MagicViewer-1.2.1|http://59.79.168.90/soft/MagicViewer_1.2.1_x86_64_linux.tar.gz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
6|sci-biology/manatee-igs|manatee-igs-2.23.1|http://sourceforge.net/projects/manatee/files/igs_manatee/2.23.1/manatee-2.23.1_linux.tgz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
5|sci-biology/mavid|mavid-2.0.4|http://bio.math.berkeley.edu/mavid/download/mavid-package-2.0.4.tar.gz|sci-biology@gentoo.org|207250:755758
5|sci-biology/mira|mira-4.9.5|http://sourceforge.net/projects/mira-assembler/files/MIRA/development/mira-4.9.5.tar.bz2|sci-biology@gentoo.org|585942:731880:755566:144316
7|sci-biology/mouse-brain-atlases|mouse-brain-atlases-0.3|http://chymera.eu/distfiles/mouse-brain-atlases-0.3.tar.xz|horea.christ@gmail.com:sci@gentoo.org
7|sci-biology/mouse-brain-atlases|mouse-brain-atlases-0.3|http://chymera.eu/distfiles/mouse-brain-atlasesHD-0.3.tar.xz|horea.christ@gmail.com:sci@gentoo.org
7|sci-biology/mouse-brain-atlases|mouse-brain-atlases-0.4|http://chymera.eu/distfiles/mouse-brain-atlases-0.4.tar.xz|horea.christ@gmail.com:sci@gentoo.org
7|sci-biology/mouse-brain-atlases|mouse-brain-atlases-0.4|http://chymera.eu/distfiles/mouse-brain-atlasesHD-0.4.tar.xz|horea.christ@gmail.com:sci@gentoo.org
7|sci-biology/mouse-brain-atlases|mouse-brain-atlases-0.5.1|http://chymera.eu/distfiles/mouse-brain-atlases-0.5.1.tar.xz|horea.christ@gmail.com:sci@gentoo.org
7|sci-biology/mouse-brain-atlases|mouse-brain-atlases-0.5.1|http://chymera.eu/distfiles/mouse-brain-atlasesHD-0.5.1.tar.xz|horea.christ@gmail.com:sci@gentoo.org
7|sci-biology/mouse-brain-atlases|mouse-brain-atlases-0.5.2|http://chymera.eu/distfiles/mouse-brain-atlases-0.5.2.tar.xz|horea.christ@gmail.com:sci@gentoo.org
7|sci-biology/mouse-brain-atlases|mouse-brain-atlases-0.5.2|http://chymera.eu/distfiles/mouse-brain-atlasesHD-0.5.2.tar.xz|horea.christ@gmail.com:sci@gentoo.org
7|sci-biology/mouse-brain-atlases|mouse-brain-atlases-0.5|http://chymera.eu/distfiles/mouse-brain-atlases-0.5.tar.xz|horea.christ@gmail.com:sci@gentoo.org
7|sci-biology/mouse-brain-atlases|mouse-brain-atlases-0.5|http://chymera.eu/distfiles/mouse-brain-atlasesHD-0.5.tar.xz|horea.christ@gmail.com:sci@gentoo.org
5|sci-biology/mreps|mreps-2.5|http://bioinfo.lifl.fr/mreps/mreps-2.5.tar.gz|sci-biology@gentoo.org|257676:755455
5|sci-biology/mRNAmarkup|mRNAmarkup-1.0|http://www.brendelgroup.org/bioinformatics2go/Download/mRNAmarkup-10-3-2013.tar.gz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
5|sci-biology/MuSeqBox|MuSeqBox-5.4|http://www.brendelgroup.org/bioinformatics2go/Download/MuSeqBox-4-8-2015.tar.gz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org|755317
6|sci-biology/ngs_backbone|ngs_backbone-1.4.0|http://bioinf.comav.upv.es/_downloads/ngs_backbone-1.4.0.tar.gz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
7|sci-biology/NGSEPcore|NGSEPcore-3.3.1|https://sourceforge.net/projects/ngsep/files/SourceCode/NGSEPcore_3.3.1.tar.gz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
7|sci-biology/NGSEPcore|NGSEPcore-3.3.1|https://sourceforge.net/projects/ngsep/files/training/UserManualNGSEP_V330.pdf|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
7|sci-biology/NGSEPplugin|NGSEPplugin-3.3.1|https://sourceforge.net/projects/ngsep/files/SourceCode/NGSEPplugin_3.3.1.tar.gz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
5|sci-biology/OBO-Edit|OBO-Edit-2.1.0|http://sourceforge.net/projects/geneontology/files/OBO-Edit%202%20%5BLatest%20versions%5D/OBO-Edit%202.1.0/2-1-0_unix_install4j.sh/download|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org|755149
5|sci-biology/OBO-Edit|OBO-Edit-2.1.0|http://sourceforge.net/projects/geneontology/files/OBO-Edit%202%20%5BLatest%20versions%5D/OBO-Edit%202.1.0/ReleaseNotes-2.1.0.txt|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org|755149
5|sci-biology/OBO-Edit|OBO-Edit-2.1.1.6|http://downloads.sourceforge.net/project/geneontology/OBO-Edit%202%20%5BLatest%20versions%5D/2.1.1-b6/2-1-1-6_unix_install4j.sh|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org|755149
5|sci-biology/OBO-Edit|OBO-Edit-2.1.1.6|http://sourceforge.net/projects/geneontology/files/OBO-Edit%202%20%5BLatest%20versions%5D/2-1-1-6/ReleaseNotes-2.1.1-b6.txt|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org|755149
7|sci-biology/opfvta_bidsdata|opfvta_bidsdata-1.0|http://chymera.eu/distfiles/opfvta_bidsdata-1.0.tar.xz|chr@chymera.eu:sci@gentoo.org
5|sci-biology/ORFcor|ORFcor-20130507|http://www.currielab.wisc.edu/files/ORFcor.tar.gz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org|755131
5|sci-biology/parafly|parafly-20130121|http://sourceforge.net/projects/transdecoder/files/OLDER/TransDecoder_r20140704.tar.gz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
6|sci-biology/pb-honey|pb-honey-14.1.15|http://sourceforge.net/projects/pb-jelly/files/PBHoney/PBHoney_14.1.15.tgz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
5|sci-biology/pb-jelly|pb-jelly-14.9.9|http://sourceforge.net/projects/pb-jelly/files/PBSuite_14.9.9.tgz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
5|sci-biology/plink|plink-1.90_pre160731|https://www.cog-genomics.org/static/bin/plink160731/plink_src.zip|sci-biology@gentoo.org|589068:595984:689096:689202:725310
5|sci-biology/plinkseq|plinkseq-0.10|http://psychgen.u.hpc.mssm.edu/plinkseq_downloads/plinkseq-src-latest.tgz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
5|sci-biology/polyphen|polyphen-2.2.2|http://genetics.bwh.harvard.edu/pph2/dokuwiki/_media/polyphen-2.2.2r405b.tar.gz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
6|sci-biology/prinseq-lite|prinseq-lite-0.20.4|https://sourceforge.net/projects/prinseq/files/standalone/prinseq-lite-0.20.4.tar.gz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
5|sci-biology/quast|quast-4.4|http://sourceforge.net/projects/quast/files/quast-4.4.tar.gz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
5|sci-biology/RADtools|RADtools-1.2.4|https://www.wiki.ed.ac.uk/download/attachments/68630442/RADmanual.pdf|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org|755323
5|sci-biology/RADtools|RADtools-1.2.4|https://www.wiki.ed.ac.uk/download/attachments/68630442/RADtools_1.2.4.tar.gz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org|755323
6|sci-biology/Ray|Ray-2.3.0|http://sourceforge.net/projects/denovoassembler/files/Ray-2.3.0.tar.bz2|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
5|sci-biology/reptile|reptile-1.1|http://aluru-sun.ece.iastate.edu/lib/exe/fetch.php?media=source:reptile-v1.1.zip|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org|755458
6|sci-biology/RSeQC|RSeQC-2.6.1|http://sourceforge.net/projects/rseqc/files/other/fetchChromSizes|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
7|sci-biology/samri_bidsdata|samri_bidsdata-0.2.1|http://chymera.eu/distfiles/samri_bidsdata-0.2.1.tar.xz|horea.christ@gmail.com:sci@gentoo.org
7|sci-biology/samri_bidsdata|samri_bidsdata-0.2|http://chymera.eu/distfiles/samri_bidsdata-0.2.tar.xz|horea.christ@gmail.com:sci@gentoo.org
7|sci-biology/samri_bindata|samri_bindata-0.1.1|http://chymera.eu/distfiles/samri_bindata-0.1.1.zip|horea.christ@gmail.com:sci@gentoo.org
7|sci-biology/samri_bindata|samri_bindata-0.1.2|http://chymera.eu/distfiles/samri_bindata-0.1.2.tar.xz|horea.christ@gmail.com:sci@gentoo.org
7|sci-biology/samri_bindata|samri_bindata-0.2|http://chymera.eu/distfiles/samri_bindata-0.2.tar.xz|horea.christ@gmail.com:sci@gentoo.org
6|sci-biology/samstat|samstat-1.5.1|http://sourceforge.net/projects/samstat/files/samstat-1.5.1.tar.gz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org|755773
5|sci-biology/scaffold_builder|scaffold_builder-20131122-r1|http://sourceforge.net/projects/scaffold-b/files/scaffold_builder_v2.1.zip|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
5|sci-biology/scaffold_builder|scaffold_builder-20131122-r1|http://sourceforge.net/projects/scaffold-b/files/scaffold_builder_v2_help.doc|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
5|sci-biology/skewer-bin|skewer-bin-0.1.104|http://sourceforge.net/projects/skewer/files/Binaries/skewer-0.1.104-linux-x86_64|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org|755572
5|sci-biology/skewer-bin|skewer-bin-0.1.104|http://sourceforge.net/projects/skewer/files/Scripts/srna-scripts-0.1.2.tar.gz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org|755572
5|sci-biology/smalt|smalt-0.7.6|http://sourceforge.net/projects/smalt/files/smalt-0.7.6.tar.gz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
6|sci-biology/SnpEff|SnpEff-4.3i|http://sourceforge.net/projects/snpeff/files/snpEff_v4_3i_core.zip|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org|755782
5|sci-biology/snphylo|snphylo-20140701|http://chibba.pgml.uga.edu/snphylo/snphylo.tar.gz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
5|sci-biology/SolexaQA|SolexaQA-2.2|http://sourceforge.net/projects/solexaqa/files/src/SolexaQA_v.2.2.zip|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
6|sci-biology/SPAdes|SPAdes-3.13.0|http://spades.bioinf.spbau.ru/release3.11.1/dipspades_manual.html|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
5|sci-biology/sra_sdk|sra_sdk-2.2.2a|http://ftp-private.ncbi.nlm.nih.gov/sra/sdk/2.2.2a/sra_sdk-2.2.2a.tar.gz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org|755329
5|sci-biology/staden_doc|staden_doc-2.0.0_beta11|http://sourceforge.net/projects/staden/files/staden/2.0.0b11/staden_doc-2.0.0b11-src.tar.gz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
5|sci-biology/staden_doc|staden_doc-2.0.0_beta9|http://sourceforge.net/projects/staden/files/staden/2.0.0b9/staden_doc-2.0.0b9-src.tar.gz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
5|sci-biology/subread|subread-1.4.6|http://sourceforge.net/projects/subread/files/subread-1.4.6/subread-1.4.6-source.tar.gz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org|755539
6|sci-biology/tablet-bin|tablet-bin-1.17.08.17|https://ics.hutton.ac.uk/resources/tablet/installers/tablet_linux_x64_1_17_08_17.sh|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org|348029:755575
6|sci-biology/tablet-bin|tablet-bin-1.17.08.17|https://ics.hutton.ac.uk/resources/tablet/installers/tablet_linux_x86_1_17_08_17.sh|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org|348029:755575
6|sci-biology/trimmomatic|trimmomatic-0.38|http://www.usadellab.org/cms/uploads/supplementary/Trimmomatic/TrimmomaticManual_V0.32.pdf|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
6|sci-biology/trimmomatic|trimmomatic-0.38|http://www.usadellab.org/cms/uploads/supplementary/Trimmomatic/Trimmomatic-Src-0.38.zip|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
5|sci-biology/ugene|ugene-1.20.0|http://ugene.unipro.ru/downloads/ugene-1.20.0.tar.gz|alexxy@gentoo.org:sci@gentoo.org
5|sci-biology/VarScan|VarScan-2.4.2|http://downloads.sourceforge.net/project/varscan/VarScan.v2.4.2.source.jar|sci@gentoo.org
5|sci-biology/wcd|wcd-0.6.3|http://wcdest.googlecode.com/files/wcd-express-0.6.3.tar.gz|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org|755545
5|sci-biology/wgs-assembler|wgs-assembler-8.3_rc2|http://sourceforge.net/projects/wgs-assembler/files/wgs-assembler/wgs-8.3/wgs-8.3rc2.tar.bz2|sci-biology@gentoo.org|610094:715874:731860:739486
5|sci-chemistry/camshift|camshift-1.35.0|http://www-vendruscolo.ch.cam.ac.uk/camshift/camshift-1.35.0.tar.gz|sci-chemistry@gentoo.org|755797
5|sci-chemistry/cpmgfit|cpmgfit-1.43|http://biochemistry.hs.columbia.edu/labs/palmer/software/cpmgfit.linux.tar.gz|sci-chemistry@gentoo.org
5|sci-chemistry/curvefit|curvefit-1.40|http://cpmcnet.columbia.edu/dept/gsas/biochem/labs/palmer/software/curvefit.linux.tar.gz|sci-chemistry@gentoo.org
5|sci-chemistry/dl_poly|dl_poly-1.9|http://ccpforge.cse.rl.ac.uk/gf/download/frsrelease/255/2627/dl_class_1.9.tar.gz|ottxor@gentoo.org:sci-chemistry@gentoo.org|755467
5|sci-chemistry/dssp2pdb|dssp2pdb-0.03|http://dev.gentooexperimental.org/~jlec/distfiles/dssp2pdb-0.03.tar|sci-chemistry@gentoo.org|755548
5|sci-chemistry/mage|mage-6.44.060606|http://kinemage.biochem.duke.edu/downloads/software/mage/mage.6.44.060606.src.tgz|sci-chemistry@gentoo.org
5|sci-chemistry/mddnmr|mddnmr-2.4-r1|http://pc8.nmr.gu.se/~mdd/Downloads/mddnmr2.4.tgz|sci-chemistry@gentoo.org
5|sci-chemistry/modelfree|modelfree-4.20|http://www.palmer.hs.columbia.edu/software/modelfree4_linux.tar.gz|jlec@gentoo.org:sci-chemistry@gentoo.org
5|sci-chemistry/mtz2hkl|mtz2hkl-0.3|http://shelx.uni-ac.gwdg.de/~tg/research/programs/conv/mtz2x/mtz2hkl/downloads/0.3/mtz2hkl_v0.3.tar.gz|sci-chemistry@gentoo.org
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6|sci-chemistry/nmrpipe|nmrpipe-8.7.2015.320.15.26|http://spin.niddk.nih.gov/NMRPipe/install/download/plugin.smile.tZ|jlec@gentoo.org:sci-chemistry@gentoo.org
5|sci-chemistry/nwchem|nwchem-6.3_p2-r1|http://www.nwchem-sw.org/images/Nwchem-6.3.revision2-src.2013-10-17.tar.gz|alexxy@gentoo.org:sci-chemistry@gentoo.org|480678:574148:393139
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5|sci-chemistry/nwchem|nwchem-6.6_p27746-r2|http://www.nwchem-sw.org/images/Tools_lib64.patch.gz|alexxy@gentoo.org:sci-chemistry@gentoo.org|480678:574148:393139
5|sci-chemistry/nwchem|nwchem-6.6_p27746-r2|http://www.nwchem-sw.org/images/Xccvs98.patch.gz|alexxy@gentoo.org:sci-chemistry@gentoo.org|480678:574148:393139
5|sci-chemistry/nwchem|nwchem-6.6_p27746-r2|http://www.nwchem-sw.org/images/Zgesvd.patch.gz|alexxy@gentoo.org:sci-chemistry@gentoo.org|480678:574148:393139
5|sci-chemistry/shiftx2|shiftx2-1.07_p20120106|http://shiftx2.wishartlab.com/download/shiftx2-v107-linux-20120106.tgz|sci-chemistry@gentoo.org
5|sci-chemistry/trajng|trajng-0.6.1|http://www.uppmax.uu.se/Members/daniels/trajng-trajectory-compression-library/trajng-0.6.1.tar.gz|alexxy@gentoo.org:sci-chemistry@gentoo.org|755341
5|sci-chemistry/usf-tools|usf-tools-9999|http://xray.bmc.uu.se/markh/usf/usf_distribution_kit.tar.gz|sci-chemistry@gentoo.org
5|sci-libs/amber99sbnmr|amber99sbnmr-0_pre130901|http://research.chemistry.ohio-state.edu/bruschweiler/files/2013/09/nmr1.tar|sci-chemistry@gentoo.org|755128
5|sci-libs/amber99sbnmr-ildn|amber99sbnmr-ildn-0_pre130901|http://research.chemistry.ohio-state.edu/bruschweiler/files/2013/09/nmr1-ildn.tar|sci-chemistry@gentoo.org|755128
5|sci-libs/amber99sb_phipsi|amber99sb_phipsi-0_pre130901|http://research.chemistry.ohio-state.edu/bruschweiler/files/2013/09/cmap.itp_.tar|sci-chemistry@gentoo.org|755800
5|sci-libs/bigdft-abi|bigdft-abi-1.0.4-r3|https://raw.githubusercontent.com/gentoo-science/sci/master/patches/bigdft-abi-1.0.4-0005.patch|sci-physics@gentoo.org
5|sci-libs/Cgraph|Cgraph-2.04|http://neurovision.berkeley.edu/software/Cgraph2.04.tar.gz|sci@gentoo.org
5|sci-libs/dcmtk|dcmtk-3.6.0|http://dicom.offis.de/download/dcmtk/release/dcmtk-3.6.0.tar.gz|sci@gentoo.org|669806:672198
5|sci-libs/dcmtk|dcmtk-3.6.0|https://raw.githubusercontent.com/gentoo-science/sci/master/patches/07_doxygen.patch|sci@gentoo.org|669806:672198
5|sci-libs/elmer-eio|elmer-eio-6.0_p4651|http://elmerfem.svn.sourceforge.net/viewvc/elmerfem/release/6.0/eio/?view=tar&pathrev=4651|sci@gentoo.org|548398
5|sci-libs/elmer-hutiter|elmer-hutiter-6.0_p4651|http://elmerfem.svn.sourceforge.net/viewvc/elmerfem/release/6.0/hutiter/?view=tar&pathrev=4651|sci@gentoo.org|755347
5|sci-libs/etsf_io|etsf_io-1.0.3-r2|http://www.etsf.eu/sites/default/files/etsf_io-1.0.3.tar.gz|sci@gentoo.org|255998
5|sci-libs/etsf_io|etsf_io-1.0.4-r1|http://www.etsf.eu/system/files/etsf_io-1.0.4.tar.gz|sci@gentoo.org|255998
5|sci-libs/fdlibm|fdlibm-5.3|http://dev.gentoo.org/~bicatali/distfiles/fdlibm-5.3.tar.bz2|sci@gentoo.org|755809
5|sci-libs/fgsl|fgsl-0.9.4|http://www.lrz.de/services/software/mathematik/gsl/fortran/fgsl-0.9.4.tar.gz|xarthisius@gentoo.org:sci@gentoo.org|755350
5|sci-libs/givaro|givaro-3.8.0|https://forge.imag.fr/frs/download.php/592/givaro-3.8.0.tar.gz|sci@gentoo.org
5|sci-libs/gotoblas2|gotoblas2-1.13-r1|http://dev.gentoo.org/~bicatali/GotoBLAS2-1.13_bsd.tar.gz|sci@gentoo.org
5|sci-libs/k3match|k3match-1.1|http://www.astro.ru.nl/~pschella/files/software/k3match/k3match-1.1.tar.gz|AstroFloyd@gmail.com:sci@gentoo.org|393527
5|sci-libs/matc|matc-6.0_p4651|http://elmerfem.svn.sourceforge.net/viewvc/elmerfem/release/6.0/matc/?view=tar&pathrev=4651|sci@gentoo.org|550870:755356
5|sci-libs/mlpack|mlpack-1.0.8|http://www.mlpack.org/files/mlpack-1.0.8.tar.gz|sci@gentoo.org
5|sci-libs/modglue|modglue-1.19|http://cadabra.phi-sci.com/modglue-1.19.tar.gz|sci@gentoo.org|755359
6|sci-libs/nipy-data|nipy-data-0.2|http://nipy.org/data-packages/nipy-data-0.2.tar.gz|horea.christ@gmail.com:sci@gentoo.org
5|sci-libs/superlu_dist|superlu_dist-3.3|http://crd.lbl.gov/~xiaoye/SuperLU//superlu_dist_3.3.tar.gz|sci@gentoo.org
5|sci-mathematics/alt-ergo|alt-ergo-0.95.2|http://dev.gentoo.org/~jauhien/distfiles/alt-ergo-0.95.2.tar.gz|sci-mathematics@gentoo.org
5|sci-mathematics/axiom|axiom-201408|http://axiom.axiom-developer.org/axiom-website/downloads/axiom-aug2014-src.tgz|sci-mathematics@gentoo.org
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5|sci-mathematics/htk|htk-3.4.1|http://htk.eng.cam.ac.uk/ftp/software/hdecode/HDecode-3.4.1.tar.gz|pedosb@gmail.com:sci-mathematics@gentoo.org
5|sci-mathematics/htk|htk-3.4.1|http://htk.eng.cam.ac.uk/ftp/software/HTK-3.4.1.tar.gz|pedosb@gmail.com:sci-mathematics@gentoo.org
5|sci-mathematics/ltl2ba|ltl2ba-1.1|http://www.lsv.ens-cachan.fr/~gastin/ltl2ba/ltl2ba-1.1.tar.gz|sci@gentoo.org|245803:755374
5|sci-mathematics/Macaulay2|Macaulay2-9999|http://www.math.uiuc.edu/Macaulay2/Downloads/OtherSourceCode/trunk/factory-4.0.0+m4.tar.gz|tom111@gmx.de:sci-mathematics@gentoo.org
5|sci-mathematics/Macaulay2|Macaulay2-9999|http://www.math.uiuc.edu/Macaulay2/Downloads/OtherSourceCode/trunk/factory.4.0.1-gftables.tar.gz|tom111@gmx.de:sci-mathematics@gentoo.org
5|sci-mathematics/Macaulay2|Macaulay2-9999|http://www.math.uiuc.edu/Macaulay2/Downloads/OtherSourceCode/trunk/gtest-1.7.0.tar.gz|tom111@gmx.de:sci-mathematics@gentoo.org
5|sci-mathematics/pff|pff-8.4|http://lipforge.ens-lyon.fr/frs/download.php/165/Float8.4.tgz|sci-mathematics@gentoo.org|259479:755380
5|sci-mathematics/ufc|ufc-1.4.2|http://launchpad.net/ufc/trunk/1.4.2/+download/ufc-1.4.2.tar.gz|sci-mathematics@gentoo.org|329187
5|sci-misc/elmer-elmergrid|elmer-elmergrid-6.0_p4651|http://elmerfem.svn.sourceforge.net/viewvc/elmerfem/release/6.0/elmergrid/?view=tar&pathrev=4651|sci@gentoo.org|755611
5|sci-misc/elmer-fem|elmer-fem-6.0_p4651|http://elmerfem.svn.sourceforge.net/viewvc/elmerfem/release/6.0/fem/?view=tar&pathrev=4651|sci@gentoo.org|502558
5|sci-misc/elmer-front|elmer-front-6.0_p4651|http://elmerfem.svn.sourceforge.net/viewvc/elmerfem/release/6.0/front/?view=tar&pathrev=4651|sci@gentoo.org
5|sci-misc/elmer-meshgen2d|elmer-meshgen2d-6.0_p4651|http://elmerfem.svn.sourceforge.net/viewvc/elmerfem/release/6.0/meshgen2d/?view=tar&pathrev=4651|sci@gentoo.org|755614
5|sci-misc/elmer-post|elmer-post-6.0_p4651|http://elmerfem.svn.sourceforge.net/viewvc/elmerfem/release/6.0/post/?view=tar&pathrev=4651|sci@gentoo.org|755383
5|sci-misc/foma|foma-0.9.16_alpha|http://foma.googlecode.com/files/foma-0.9.16alpha.tar.gz|flammie@gentoo.org|755815
5|sci-misc/kotus-sanalista|kotus-sanalista-1-r1|http://download.gna.org/omorfi/kotus-sanalista-v1-r1.tar.bz2|flammie@gentoo.org
5|sci-misc/omorfi|omorfi-0.1_alpha|http://download.gna.org/omorfi/omorfi-0.1-alpha.tar.bz2|flammie@gentoo.org
5|sci-misc/sfst|sfst-1.4.2|http://www.cis.uni-muenchen.de/~wastl/emacs/sfst.el|flammie@gentoo.org|188216
5|sci-misc/sfst|sfst-1.4.6g|http://www.cis.uni-muenchen.de/~wastl/emacs/sfst.el|flammie@gentoo.org|188216
6|sci-misc/sfst|sfst-1.4.7d|http://www.cis.uni-muenchen.de/~schmid/tools/SFST/data/vim-mode.tar.gz|flammie@gentoo.org|188216
6|sci-misc/sfst|sfst-1.4.7d|http://www.cis.uni-muenchen.de/~wastl/emacs/sfst.el|flammie@gentoo.org|188216
5|sci-physics/openmx|openmx-3.6|http://www.openmx-square.org/openmx3.6.tar.gz|sci-physics@gentoo.org|645464:687164:755512
5|sci-physics/openmx|openmx-3.7.8|http://www.openmx-square.org/openmx3.7.tar.gz|sci-physics@gentoo.org|645464:687164:755512
6|sys-cluster/lustre|lustre-2.10.1|https://dev.gentoo.org/~alexxy/distfiles/lustre-2.10.1.tar.gz|cluster@gentoo.org|705996:725746:728154
5|sys-cluster/mvapich2|mvapich2-1.6-r1|http://mvapich.cse.ohio-state.edu//download/mvapich2/mvapich2-1.6.tgz|cluster@gentoo.org
6|sys-devel/gdebugger|gdebugger-6.2.438|http://developer.amd.com/Downloads/AMDgDEBugger6.2.438x86_64.tar.gz|nbigaouette@gmail.com:sci@gentoo.org
6|sys-devel/gdebugger|gdebugger-6.2.438|http://developer.amd.com/Downloads/AMDgDEBugger6.2.438x86.tar.gz|nbigaouette@gmail.com:sci@gentoo.org
6|x11-libs/tr|tr-1.3|http://www.mesa3d.org/brianp/tr-1.3.tar.gz|sci@gentoo.org