6|sci-biology/Atlas2|Atlas2-1.4.3|http://downloads.sourceforge.net/project/atlas2/Atlas2_v1.4.3.zip|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
5|sci-biology/beagle|beagle-4.0|http://faculty.washington.edu/browning/beagle/beagle.r1399.src.zip|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
5|sci-biology/beaglecall|beaglecall-20101115|http://faculty.washington.edu/browning/beaglecall/beaglecall_1.0.1_15Nov10.src.zip|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
5|sci-biology/beaglecall|beaglecall-20101115|http://faculty.washington.edu/browning/beaglecall/beaglecall_example.zip|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
5|sci-biology/cgview-bin|cgview-bin-20131130|http://www.ualberta.ca/~stothard/downloads/cgview_comparison_tool.zip|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
5|sci-biology/conform-gt|conform-gt-1174|http://faculty.washington.edu/browning/conform-gt/conform-gt.r1174.zip|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
5|sci-biology/conrad|conrad-1|http://www.broadinstitute.org/annotation/conrad/conradSrcV1.zip|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
5|sci-biology/EBARDenovo|EBARDenovo-1.2.2|http://downloads.sourceforge.net/project/ebardenovo/EBARDenovo-1.2.2-20130404.zip|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
5|sci-biology/ensembl-tools|ensembl-tools-86|https://github.com/Ensembl/ensembl-tools/archive/release/86.zip|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
5|sci-biology/fastqc|fastqc-0.11.3|http://www.bioinformatics.babraham.ac.uk/projects/fastqc/fastqc_v0.11.3_source.zip|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
5|sci-biology/genomeview-bin|genomeview-bin-2450|http://downloads.sourceforge.net/project/genomeview/GenomeView/genomeview-2450.zip|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
5|sci-biology/graf-bin|graf-bin-20171212|http://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/GetZip.cgi?zip_name=GRAF_files.zip|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
5|sci-biology/ICC|ICC-2.0.1|http://indra.mullins.microbiol.washington.edu/cgi-bin/ICC/info.cgi?ID=ICC_v2.0.1.zip|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
5|sci-biology/IMAGE|IMAGE-2.4.1|http://sourceforge.net/projects/image2/files/IMAGE_version2.4.1_64bit.zip|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
6|sci-biology/imagej|imagej-1.51k|http://imagej.nih.gov/ij/download/src/ij151k-src.zip|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
6|sci-biology/imagej|imagej-1.51k|http://wsr.imagej.net/distros/cross-platform/ij150.zip|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
5|sci-biology/reptile|reptile-1.1|http://aluru-sun.ece.iastate.edu/lib/exe/fetch.php?media=source:reptile-v1.1.zip|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org|755458
5|sci-biology/scaffold_builder|scaffold_builder-20131122-r1|http://sourceforge.net/projects/scaffold-b/files/scaffold_builder_v2.1.zip|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
6|sci-biology/SnpEff|SnpEff-4.3i|http://sourceforge.net/projects/snpeff/files/snpEff_v4_3i_core.zip|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org|755782
5|sci-biology/SolexaQA|SolexaQA-2.2|http://sourceforge.net/projects/solexaqa/files/src/SolexaQA_v.2.2.zip|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
5|sci-biology/trim_galore|trim_galore-0.4.0|http://www.bioinformatics.babraham.ac.uk/projects/trim_galore/trim_galore_v0.4.0.zip|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
6|sci-biology/trimmomatic|trimmomatic-0.38|http://www.usadellab.org/cms/uploads/supplementary/Trimmomatic/Trimmomatic-Src-0.38.zip|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org
5|sci-libs/jhdf5|jhdf5-14.12.1|https://wiki-bsse.ethz.ch/download/attachments/26609237/sis-jhdf5-14.12.1-r33502.zip|mmokrejs@fold.natur.cuni.cz:sci-biology@gentoo.org